FMO02430.5prime Sequence
1199 bp (1027 high quality bases) assembled on 2008-05-23
> FMO02430.5prime
CAGTCGACATGAGGCGTCGCAAAGTGCTCATCTGCTGGGCTGCTCTGCAG
GCGGGCAGCTCCATCCTCACCTGCCTGCTCCTCCTACTGACCACCGGCCA
GAATCCGCAGCAGGTGGCAGCCGGAATAGTGCCGCCTCCGTGGAGTGATC
CCGCACAGAATCCGTGCGCCAGCATGTCCGGTGGCTGGCAGCTGCTGTAC
TGGGCACCTCTGAAGAAGTGCTTCAAGATCTTCACCCTCGGCTATCCATG
TCCGGCCACCATGGAGCTCAGTCCCACCGCAGTGAGTGCCAAGCGTAAGG
ATGCACCTGCAGCCGAGTGCCGCTGCCCTCCGGGAACTGCACTCAGTCCG
CTTCACGATAATGTGTGCTACAAGCTATACGAACGGGGACCCTGCCAACC
CGAGGAGTACTTCCAACCCGTGCCGGATCAGGTCAAGAGAACCGCAACCG
GCAACCGTTGGGGTACGTGCAAGCGACCGCTGCATTGCCCGGAGGACATG
CTCTTCTGGCCGAGGGACAACAAGTGCTATGCGAGGCATGCAAAGGGTCC
ATGCAGCCGGGGTAAACTCCTCGTTCGCAACGAGGAGGGACTGGCCGAGT
GCCGTTGCGAGGATGTGGGCGACTTGGCCTCGTTCTACTATCCGGCAGAG
GAGTCTTGCTATGAGCACTACACCAAAGGACCCTGCTCGACGCCGGGTCA
CATCTTCTTGCCCGGCGGTCGATGCGACTGCCAGCGGCACTTGCCGCACT
ATCATGCTCCGCATCAAATGTGCTATGAGCTGGACACTCCTGGCCCCTGT
CCACCTGGTCACATCTTTCGCATACCCGACGAGGTCCAGGAGACAACGGG
CAGCACCCTGCAGCTTTTGCCTCGTGCCCAGTGCCAGTGCAAGGAGGGCT
ATGTGCCCTGTAGCGATGGCATCTGCTATCGCCTGTACACATGGGTCCCT
GTGACCCAATGAGTTCCTGGTCAACGGACAGCTGTGTGCGCAACTTCTGT
GCAAGATCGCCTGTACTTCCCAGCGGAAGATTCTTGCTACAGATTGATCT
CAAGGCCCGTGTGCCTACATCAGGGGTGATCTTCGACTCCCGCAGGCATC
ATCATGCATCTCCTACATGGAATGGGCGGTGGTTCGGTCTCCGTCGGATC
ACATGCCGGGGAAGGGAGCGGATAAGGACACAAATATTTCCAAGTCCCC
FMO02430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16959-RE | 1866 | CG16959-RE | 268..1413 | 8..1135 | 5230 | 98.1 | Plus |
| CG16959-RD | 1843 | CG16959-RD | 245..1390 | 8..1135 | 5230 | 98.1 | Plus |
| CG16959-RC | 2043 | CG16959-RC | 445..1590 | 8..1135 | 5230 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15122624..15123055 | 439..8 | 2160 | 100 | Minus |
| 3L | 28110227 | 3L | 15121064..15121409 | 783..438 | 1730 | 100 | Minus |
| 3L | 28110227 | 3L | 15120635..15120950 | 1088..783 | 1090 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:53 has no hits.
FMO02430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:57 Download gff for
FMO02430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RB | 235..1395 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:53 Download gff for
FMO02430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RB | 238..1398 | 1..1142 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:39 Download gff for
FMO02430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16959-RC | 438..1598 | 1..1142 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:39 Download gff for
FMO02430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15120572..15120949 | 784..1142 | 93 | <- | Minus |
| 3L | 15121064..15121407 | 440..783 | 100 | <- | Minus |
| 3L | 15122624..15123058 | 1..439 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:53 Download gff for
FMO02430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15113672..15114049 | 784..1142 | 93 | <- | Minus |
| arm_3L | 15114164..15114507 | 440..783 | 100 | <- | Minus |
| arm_3L | 15115724..15116158 | 1..439 | 99 | | Minus |
