FMO02431.5prime Sequence
953 bp (953 high quality bases) assembled on 2008-05-23
> FMO02431.5prime
CAGTCGACATGGACTCTGCCGCCGCCGCCGCCGCCAAGCGCGTTCAAATC
GAGAAGGCCCACAACTTTATGCGCCAGTATCGTGATCCCGAGTCCAGGGA
ACTCAAGAAGCTGTCGGCCAACCAGTTCATGGATGTCTGGGCGCATTACG
ATAAAGATGGAAATGGCTACATTGAGGGCACCGAGCTGGACGGATTCCTG
CGGGAGTTCGTGTCGAGTGCCAATGCCACAGACATTAGTCCAGAGGCAGT
AACGGACACCATGCTCGAGGAGCTAAAGTCCTGCTTCATGGAGGCCTACG
ATGACAATCAGGATGGTAAAATCGATATCAGAGAGCTGGCTCAACTTTTG
CCCATGGAGGAGAATTTCCTTTTGCTCTTCCGCTTCGATAATCCTCTGGA
ATCTAGCGTTGAATTCATGAAGATCTGGCGTGAATACGACACCGACAATT
CGGGTTACATTGAAGCGGATGAGCTGAAAAATTTCTTGCGCGATTTGCTC
AAAGAGGCCAAAAAGATCAACGACGTGTCCGAGGACAAGCTCATTGAGTA
CACCGATACTATGCTCCAAGTATTCGATGCCAACAAGGACGGACGTCTGC
AGTTGTCGGAAATGGCCAAATTGCTTCCGGTTAAAGAGAACTTCCTGTGC
CGCCAAGTGTTTAAGGGCGCCACAAAGTTGACCAAAGAGGATATTGAAAA
AGTATTCTCACTCTACGATCGTGACAATAGCGGCACCATTGAAAATGAGG
AGCTCAAGGCTTCTTGAAGGACCTTTTGGAGTTGGTCAAGAAGGACGACT
ATGATGCCCAGGATCTGGCCGCTTTCGAGGAGACCATCATGCGGGGAGTT
GGCACCGACAAGCATGGAAAGATCTCCCGGAAAGAACTGACCATGATTCT
GCTACACTGGCCAAATATCGCCCGACGACGAGGAGGCAAGCTTTCTAGAC
CAT
FMO02431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cbp53E-RB | 1400 | CG6702-RB | 322..1251 | 9..935 | 4575 | 99.7 | Plus |
| Cbp53E-RA | 2705 | CG6702-RA | 273..1202 | 9..935 | 4575 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16984340..16984491 | 9..160 | 760 | 100 | Plus |
| 2R | 25286936 | 2R | 16986069..16986211 | 421..563 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 16994409..16994554 | 792..935 | 630 | 98.6 | Plus |
| 2R | 25286936 | 2R | 16984840..16984935 | 244..339 | 465 | 99 | Plus |
| 2R | 25286936 | 2R | 16985917..16986005 | 334..422 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 16984698..16984785 | 159..246 | 440 | 100 | Plus |
| 2R | 25286936 | 2R | 16994282..16994354 | 723..794 | 315 | 98.6 | Plus |
| 2R | 25286936 | 2R | 16994158..16994217 | 664..723 | 300 | 100 | Plus |
| 2R | 25286936 | 2R | 16986580..16986636 | 563..619 | 285 | 100 | Plus |
| 2R | 25286936 | 2R | 16986705..16986751 | 620..666 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:38 has no hits.
FMO02431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:19 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:54 Download gff for
FMO02431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp53E-RA | 265..1207 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:47 Download gff for
FMO02431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cbp53E-RA | 265..1207 | 1..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:47 Download gff for
FMO02431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16984332..16984490 | 1..159 | 97 | -> | Plus |
| 2R | 16984699..16984784 | 160..245 | 100 | -> | Plus |
| 2R | 16984842..16984931 | 246..335 | 100 | -> | Plus |
| 2R | 16985919..16986005 | 336..422 | 100 | -> | Plus |
| 2R | 16986071..16986211 | 423..563 | 100 | -> | Plus |
| 2R | 16986581..16986636 | 564..619 | 100 | -> | Plus |
| 2R | 16986705..16986750 | 620..665 | 100 | -> | Plus |
| 2R | 16994160..16994216 | 666..722 | 100 | -> | Plus |
| 2R | 16994282..16994353 | 723..793 | 98 | -> | Plus |
| 2R | 16994411..16994559 | 794..941 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:54 Download gff for
FMO02431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12871837..12871995 | 1..159 | 97 | -> | Plus |
| arm_2R | 12872204..12872289 | 160..245 | 100 | -> | Plus |
| arm_2R | 12872347..12872436 | 246..335 | 100 | -> | Plus |
| arm_2R | 12873424..12873510 | 336..422 | 100 | -> | Plus |
| arm_2R | 12873576..12873716 | 423..563 | 100 | -> | Plus |
| arm_2R | 12874086..12874141 | 564..619 | 100 | -> | Plus |
| arm_2R | 12874210..12874255 | 620..665 | 100 | -> | Plus |
| arm_2R | 12881665..12881721 | 666..722 | 100 | -> | Plus |
| arm_2R | 12881787..12881858 | 723..793 | 98 | -> | Plus |
| arm_2R | 12881916..12882064 | 794..941 | 97 | | Plus |
