FMO02437.5prime Sequence
930 bp (930 high quality bases) assembled on 2008-05-23
> FMO02437.5prime
CAGTCGACATGCCCCAATCCATCGCCAGGATCGCCAATGTCGGTAAGGAG
CACCGAACGGTGTCCAGTCACCCGAATTACCTTCAGTTCGAGGAGCCCAA
GTTCGACCTAAAGGATGTTACCGTTGAAGAGCTGGCCGCCGCTGCTAACG
TAACAGTGGACACTATCAAGCACGCCATTTACGTCCGGGAGCAGCAGCTA
AAGGCCGAACACCGGGCCCAACTGGCGGCCAAGCTAAGGGAAGAGTTTAT
GCGCACCTCCACTGTGAGGACTACGACCACGACGACCACAACGACAACCA
CTACACCGCGCCCACAAAAGTCGCTGGCGGAGCACAAGGTGTCCAAGGTA
ATGAATGCCCCTAAAGAGTACTATCCAGTGGGCTACGATAAGAACTTTGA
CGACAACTTCAAATCCAAGGTGGACCTGCCACCTACAAGCTTCTCCTGCG
CTAAGCAAAAGCACTTCCCCGGTCTCTACGCTGACACCGACCTTGGCTGC
ATGGTATTCCACGTATGCGCCCTAACCGATGACGGCATGGTGCGGAAGTC
GTTCCTTTGCCCGGAGAACACACTCTTCGACCAGACGATCTTAAAGTGCA
ACTGGTGGTTCTACGTCGACTGCAGCTCTAGCACGAGCGTCTACGACTCC
AACATTCCCATCTCAAAGAGCTATCAGCTGATGAAGTCGCTCACCTATTT
CTCCAAGTACGCTGGCGGTCAGAGGCACGAGCAGGGTGGAGACAAAGACG
AGAATGCGCTGGACATCGATTCGCTGAGAGAGTCGATGGAGGGCGTGGCC
CGGCGCCAGGAGCAGCCAAGAAGCGGAGCTGAGGGTGGAGGAGCAGCGCA
GCATGCCCAAGGAGGACCATGAGCACGTGGTGCCCGCGGAGGCAGAGCAG
CAGCTATCCAACGCAAGCTTTCTAGACCAT
FMO02437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtg-RF | 2276 | CG7549-RF | 837..1742 | 9..912 | 4480 | 99.8 | Plus |
| mtg-RE | 2399 | CG7549-RE | 960..1865 | 9..912 | 4480 | 99.8 | Plus |
| mtg-RH | 2233 | CG7549-RH | 794..1699 | 9..912 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8259773..8260184 | 503..912 | 1960 | 99.5 | Plus |
| 3R | 32079331 | 3R | 8259119..8259459 | 9..349 | 1705 | 100 | Plus |
| 3R | 32079331 | 3R | 8259545..8259705 | 346..506 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:37 has no hits.
FMO02437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:04 Download gff for
FMO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7549-RB | 23..947 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:03 Download gff for
FMO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtg-RE | 953..1877 | 1..925 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:28 Download gff for
FMO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtg-RH | 788..1712 | 1..925 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:28 Download gff for
FMO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8259113..8259457 | 1..347 | 98 | -> | Plus |
| 3R | 8259547..8259702 | 348..503 | 100 | -> | Plus |
| 3R | 8259774..8260197 | 504..925 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:03 Download gff for
FMO02437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4084835..4085179 | 1..347 | 98 | -> | Plus |
| arm_3R | 4085269..4085424 | 348..503 | 100 | -> | Plus |
| arm_3R | 4085496..4085919 | 504..925 | 98 | | Plus |
