FMO02438.5prime Sequence
1056 bp (1042 high quality bases) assembled on 2008-05-23
> FMO02438.5prime
CAGTCGACATGCCTACCATAACCGAGGATTGCATAGATGGATTCCAACAG
TACTACTCGCGGCCACCGGAGAGGCCCAAGAAGAAGTCCCTGAAGCAGAT
GGTCTACGACTCGGAGGACAACTCCTACTTCGGACGCTCGATGGACAGCT
GGGCCAAAATCGGAATCTTCTATGTGGCCTTCTACGGAGTCCTAGCCGCC
CTCGTTGCCATCTGCATGTGGGCCTTCTTCCAAACTCTCGATCCTCGCAT
TCCCAAGTGGACCCTGGACCGTTCCCTGATAGGTACAAATCCAGGTCTAG
GTTTTCGACCCCTGCCACCGGTGGACAATGTGGAAAGCACTTTGATCTGG
TACAAGGGCACCCAACACGAGAACTACAAGCACTGGACAGACTCCCTGGA
TGATTTCCTTGCGGTGTACAAAGTACCTGGTCTAACACCCGGCCGTGGTC
AGAACATCTACAACTGCGACTACAACCAGCCGCCGCCAAAGGGTCAGGTG
TGCGACGTGGACATCAAGACGTGGTCGCCGTGCACCAAGGAGAATAACTA
CAGCTACCACAAGAGTGCGCCGTGTATCTTCCTCAAGCTGAACAAGATCT
ACGGCTGGATTCCGGAGTACTACAACAGATCGAATGACTTGCCCGCGAAC
ATGCCCGCCAGCTTGAAGACCTACATCGCAGAGGTCGAGAAGACGCAGCC
AGAAAAGCTAAACACCATTTGGGTATCGTGCGAGGGCGAGAACCCAGCCG
ACCAGGAGAACATTGGTGCTGTCAACTACCTGCCAATCAGGGGATTCCCC
GGCTACTTCTATCCCTACCAGAACTCCGAGGGCTACTTGAGTCCCTGGTG
GCGGTGCACTTCCAGCGCCCCAAACGCGGAATCATCATCAACGTGGAGTG
CAGGCTTGGGCTCGCAACATCATACACGATCGCAAGGAGAGAATCGGATC
GGTGCACTATGAGCTCCTCATTGATGCAAGCTTTCTAGACCATTCGTTTG
GCGCCCCGGGCCCAGGTAGTGGTCATAATCTATCATAATCATATCATATC
ACACTG
FMO02438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv2-RG | 2635 | CG9261-RG | 795..1763 | 9..975 | 4795 | 99.8 | Plus |
| nrv2-RF | 2143 | CG9261-RF | 303..1271 | 9..975 | 4795 | 99.8 | Plus |
| nrv2-RC | 2668 | CG9261-RC | 828..1796 | 9..975 | 4795 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6791031..6791328 | 707..410 | 1475 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6790798..6790969 | 876..706 | 810 | 99.4 | Minus |
| 2L | 23513712 | 2L | 6796337..6796481 | 153..9 | 725 | 100 | Minus |
| 2L | 23513712 | 2L | 6791699..6791842 | 296..153 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 6791518..6791640 | 414..292 | 615 | 100 | Minus |
| 2L | 23513712 | 2L | 6790642..6790742 | 975..876 | 455 | 99 | Minus |
Blast to na_te.dros performed 2014-11-28 19:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 925..978 | 868..923 | 122 | 73.7 | Plus |
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 4633..4686 | 255..202 | 117 | 68.5 | Minus |
FMO02438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:06 Download gff for
FMO02438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9261-RC | 825..1804 | 3..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:57 Download gff for
FMO02438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RC | 823..1802 | 3..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:49 Download gff for
FMO02438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv2-RC | 823..1802 | 3..983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:49 Download gff for
FMO02438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6790636..6790742 | 876..983 | 95 | <- | Minus |
| 2L | 6790799..6790967 | 708..875 | 99 | <- | Minus |
| 2L | 6791031..6791323 | 415..707 | 100 | <- | Minus |
| 2L | 6791518..6791637 | 295..414 | 100 | <- | Minus |
| 2L | 6791701..6791841 | 154..294 | 100 | <- | Minus |
| 2L | 6796337..6796486 | 3..153 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:57 Download gff for
FMO02438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6791031..6791323 | 415..707 | 100 | <- | Minus |
| arm_2L | 6791518..6791637 | 295..414 | 100 | <- | Minus |
| arm_2L | 6791701..6791841 | 154..294 | 100 | <- | Minus |
| arm_2L | 6796337..6796486 | 3..153 | 98 | | Minus |
| arm_2L | 6790636..6790742 | 876..983 | 95 | <- | Minus |
| arm_2L | 6790799..6790967 | 708..875 | 99 | <- | Minus |
