FMO02439.5prime Sequence
1233 bp (994 high quality bases) assembled on 2008-05-23
> FMO02439.5prime
CAGTCGACATGGAGCTCTCCTCCGCCTCATCCGCCCATCTCAATGGCAAG
GAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGCATCCCAGATACAA
ATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTATGAGTTTACCCACA
CCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCACACGCGATGCCGAT
GGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGCCGGATCAACTGCC
CATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGGCCCAGTAAACGCA
ATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGGTGATTACTGCAAT
GAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCAATGATGTGACGGT
GATAACCGCGGATACCAGTAGCATAAGCAAGATGCTCGTCGCCGTTCTGG
GTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGACCATCTTCTTCATT
CGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAACCAAACAGGACCC
GGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCCACCAGCGCCGGGG
ACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGACCTCCGGCTCGGGC
AGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCAAACAGGTCACCCT
GATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTTTGGCGCGGTCACT
GGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAGTCGCGACGAGGAG
TCCTGGAAGCGGGAGACAGAGATATATAGCACCATATTGCTACGACATGA
AAATATTCTGGGATTCATCGGCTCTGACATGACGTCGCGGAACTCGTGCA
CCAACTTTAGCTGATGACACACTACTATCCACTGAGCTCGCTCTTGATCA
CTAAACAGTAACGCCCTAAGCAAAACGATATGGTATGGATTTGCCTGTCA
TAGCTAATGGGACCGTACACTTGCCTACTGAGATATTTCGGCAAGCAAAG
CAAGGCAGCTATGGACCACCGCGAATTGAGAGTCAAGAAATGCTGTCACT
CCAACGGTTCCGGGAGATAGCGGAATTTGACTGCCTATCCCATTCCCGTT
CAGGTACCTGGACTTGGCAACCAAGTGAACCAGGCCACACTGAGCCTAGA
GTCCTTGTTAGTAAGAGCTATTATCTAAAAAAG
FMO02439.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RB | 2716 | CG1891-RB | 458..1589 | 6..1129 | 5040 | 97 | Plus |
| sax-RA | 2415 | CG1891-RA | 157..1288 | 6..1129 | 5040 | 97 | Plus |
| sax-RC | 2451 | CG1891-RC | 280..1324 | 93..1129 | 4605 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7807705..7808366 | 168..829 | 3310 | 100 | Plus |
| 2R | 25286936 | 2R | 7808508..7808763 | 828..1079 | 760 | 91.8 | Plus |
| 2R | 25286936 | 2R | 7807113..7807201 | 6..94 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 7807566..7807644 | 92..170 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3516..3616 | 40..146 | 115 | 62 | Plus |
FMO02439.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:26:20 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:45 Download gff for
FMO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 153..1251 | 1..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:30 Download gff for
FMO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 153..1251 | 1..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:30 Download gff for
FMO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7807109..7807201 | 1..94 | 96 | -> | Plus |
| 2R | 7807569..7807644 | 95..170 | 100 | -> | Plus |
| 2R | 7807708..7808366 | 171..829 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:45 Download gff for
FMO02439.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3694614..3694706 | 1..94 | 96 | -> | Plus |
| arm_2R | 3695074..3695149 | 95..170 | 100 | -> | Plus |
| arm_2R | 3695213..3695871 | 171..829 | 100 | -> | Plus |
