FMO02441.5prime Sequence
1225 bp (1065 high quality bases) assembled on 2008-05-23
> FMO02441.5prime
CAGTCGACATGACCGCCAAGCCGAAGTTTGTGTATGAGAAGGATGACCGG
GGCACCATTGGGGAGATAGACGACAACGAGGTGGACCGCATTGCGGAGTG
CTTCAAGGGTCGCAGTCTGTTCATCACAGGAGGCACTGGGTTCCTGGGCA
AGGTCCTGGTCGAGAAGTTGCTGCGTTCGTGCGGTGGCCTAAAGCGCATT
TATCTGCTCATCCGCCCTAAGAAGGGCAAGGATCCTCAGGAGCGCATCAA
GGATATATTCCAGAATGTGCTTTTCGACCAAGTGAAGCAGATGCGTGGCG
AGGAGCACATCCTGCAGCAAGTGGTGGCCATTGCCGGCGACGTCCTTTCG
CCAGGCCTGGGAATCTCCGAGAAAGATCTGGAAACTCTGCGCCAGGAGGT
GTCCATTGTGTACCATTGTGCAGCTACAGTGCGCTTTGATGAACCCCTAC
GAAATGCCGTGTTCATGAACACCCGCGGCACCAAGTACATGCTGGAGCTG
GCTCTGACGTTGAAGCACCTGGACTTCTTCGCCTACTGCTCGACGGCGTA
CTGCCACCTGCACGTTAAGACGCTGTACGAGAAGCCCTACGATCCACCAG
CAGATCCGCACAAGGTGATGCAGGCATGCGAGTGGCTGACGGACGACGAG
GTGGCCACCATCGAGCGCAAGGTGCTCGGGGCTATCCCAAACACGTATGC
CTACACCAAGTCACTGGCTGAGGCGCTGGTGGTGGAGAAGTTCGAAGAGC
TTCCCGCCGTAATCCTGCGCCCCTCGATCGTCATACCCATCTGGAAGGAG
CCCATTCCCGGCTGGACGGACAACATCAACGGACCCACCGGCCTGCTTAT
CGGAGCCGGAAAGGGTGTCATCCGCACCATGTACTGCTATTCCTCCGGCT
ACGGCGATTTCCTGCCAGTGGATGTGGCTGTTAACGGTATACTAGTGGCC
AGCTGGAGGAACATCACAGCGGGCACAGATAGACCAATCGGGTTGCACAC
ATGACCTCGTCACGACATCAAGGTGTCCTGGGGCGGAAATCATCGAGCTG
GGTCGCTGGGGTGATGAAGAACAAAGGTGCCACTACGGCGTAGCTGGCTA
TCCAGGTGGATTCGATGAGTCCCACTATGGGTGCACTCCACTCTGCATGT
CCTCTCAGGGATGCCTGTCCTCCTTTGGGACGCTCGCTCTTGGATCCTCT
CCATCTCGCCCGGATATAGTACTGC
FMO02441.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1441-RB | 1863 | CG1441-RB | 133..1321 | 9..1190 | 5365 | 97.5 | Plus |
| CG1441-RA | 1866 | CG1441-RA | 136..1324 | 9..1190 | 5365 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9899716..9900394 | 1109..433 | 2975 | 97.8 | Minus |
| 2R | 25286936 | 2R | 9900976..9901142 | 175..9 | 835 | 100 | Minus |
| 2R | 25286936 | 2R | 9900513..9900677 | 433..269 | 825 | 100 | Minus |
| 2R | 25286936 | 2R | 9900776..9900870 | 269..175 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:04 has no hits.
FMO02441.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:08 Download gff for
FMO02441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1441-RB | 23..1196 | 1..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:39 Download gff for
FMO02441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1441-RA | 127..1300 | 1..1167 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:23 Download gff for
FMO02441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1441-RA | 127..1300 | 1..1167 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:23 Download gff for
FMO02441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9899654..9900393 | 434..1167 | 96 | <- | Minus |
| 2R | 9900513..9900676 | 270..433 | 100 | <- | Minus |
| 2R | 9900776..9900869 | 176..269 | 100 | <- | Minus |
| 2R | 9900976..9901149 | 1..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:39 Download gff for
FMO02441.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5787159..5787898 | 434..1167 | 96 | <- | Minus |
| arm_2R | 5788018..5788181 | 270..433 | 100 | <- | Minus |
| arm_2R | 5788281..5788374 | 176..269 | 100 | <- | Minus |
| arm_2R | 5788481..5788654 | 1..175 | 97 | | Minus |
