FMO02443.5prime Sequence
1200 bp (1038 high quality bases) assembled on 2008-05-23
> FMO02443.5prime
CAGTCGACATGCTAAACAGGTTCATTGGTTTATCGGCTGCGATCGTGGGT
CGGAGCAGTCGGATCAGCGGCTTTCCGTTCTCGCCGCTCCTTAAAGCTGG
AAATCAAAGCCAGAATCGCACCATGTCCGCTGGCAAGGCTTTCAAGGTCC
TGGTGACACATCCCGAGGTTCCCCAGGAGGGCATTGATCTGCTGAAGGAG
AACTGCGAGATCGTCCAGGTGCAGAGTGTTCCCATCAACCGGGCGGAGCT
GCTGGAGAAAATCCGTGGCGTGGATGGCGTTCTCTGGGGTGGACACGAAC
CCCTCAATGCCGAGGCCCTCGATGCTGCCGGTCCCCAGCTGAAATCCATC
TCCACCATGTCGGCGGGAATCGACTACGTCGATGTGCCGGAGGTAAAGAG
ACGTAAGATCCCGCTGGGACACACGCCCACCGTTCTCAACACCGCCGTGG
CCGATTTGGCAGTGGGTCTCCTGATCGCCGCCAGTCGCCGTTTTCACGAG
GGTCGCAAGACCATCGACAATGACAAGTGGGAAAACTACCATCTTAACTG
GCTGTTGGGCCAGGATATTCGTGATTCCACCGTGGGATTCTACGGCTTTG
GAGGCATTGGTCAGGCTATTGCCAAGCGTTTGTCTGGATTCGACATTGAC
AAGGTGCTGTACACCACCCGTCGTCGTGTTCACAAGGAGATCGAGGAGGA
GTTCAATGCCAAGAAAGTTGACTTCGATACCCTTCTGGCCGAGAGTGACT
TCGTAGTGATCGCTTCTCCTTTGACGAAGGACACACAGGGCGTCTTTAAT
GCCACCGCCTTCAACAAGATGAAGCAGACTGCTGTGCTGGTTAACATTGC
CAGGGGCAAAATCGTCAACCAGGATGACCTCTACGAGGCTTTGAAAGCCA
ACCGAATCTTTCCGCCGGACTCGACGTCACGGATCCGGAACCATTGTCGC
CCAAGGACAAGCTGCTGACGCTTGACATGTTGTGTCCTGCCCATATTGGA
TCCGCCACGAAGCGCACCCGTGCGAAATGTCCACAATGCTGCCATATGTG
CTCCGCATGCTGGGGGCCAGTTGTCCCCGCCTACGCAGCTTTCTTAACAT
TCGTGGGCGGCGGCCCAGGTAATGACTAATCTAATCTAGTCTAGTCTAAT
CACACTAGCTAGGAATCTGTCCATGGACATAGGGCTGGATATTCCCCCAT
FMO02443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9331-RI | 1550 | CG9331-RI | 347..1402 | 9..1056 | 5050 | 99.1 | Plus |
| CG9331-RH | 1413 | CG9331-RH | 210..1265 | 9..1056 | 5050 | 99.1 | Plus |
| CG9331-RM | 1827 | CG9331-RM | 624..1679 | 9..1056 | 5050 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20825667..20826087 | 100..520 | 2105 | 100 | Plus |
| 2L | 23513712 | 2L | 20826633..20826970 | 521..858 | 1690 | 100 | Plus |
| 2L | 23513712 | 2L | 20831946..20832287 | 517..858 | 570 | 77.8 | Plus |
| 2L | 23513712 | 2L | 20827032..20827151 | 859..977 | 550 | 99.2 | Plus |
| 2L | 23513712 | 2L | 20825421..20825512 | 9..100 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:30 has no hits.
FMO02443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:09 Download gff for
FMO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 316..1360 | 9..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:57 Download gff for
FMO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RC | 318..1362 | 9..1046 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:21 Download gff for
FMO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9331-RM | 624..1668 | 9..1046 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:21 Download gff for
FMO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20826633..20826970 | 521..858 | 100 | -> | Plus |
| 2L | 20827032..20827157 | 859..982 | 98 | -> | Plus |
| 2L | 20827497..20827545 | 983..1028 | 91 | -> | Plus |
| 2L | 20825421..20825512 | 9..100 | 100 | -> | Plus |
| 2L | 20825668..20826087 | 101..520 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:57 Download gff for
FMO02443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20825421..20825512 | 9..100 | 100 | -> | Plus |
| arm_2L | 20825668..20826087 | 101..520 | 100 | -> | Plus |
| arm_2L | 20826633..20826970 | 521..858 | 100 | -> | Plus |
| arm_2L | 20827032..20827157 | 859..982 | 98 | -> | Plus |
| arm_2L | 20827497..20827545 | 983..1028 | 91 | -> | Plus |
