FMO02444.5prime Sequence
1230 bp (1015 high quality bases) assembled on 2008-05-23
> FMO02444.5prime
CAGTCGACATGTTGCCCACGGACAAGGGCAGTTTGACGGCCGGCAGGCCG
CAAAAATCTCATTGCCATGGATCGGTATCCGTGTCGGATCAGCAGCTCCT
GCAGCACCTCCATCCACACACGCATCCGCGTCCAGTGCACCTGCCACCCG
CACATGCCACACACTCACCCGCCTGCGAGAAGCGCTTGGAGGCGGAGACG
CCGCGCCGGGATCTCCACGAGCTGCTGCTCGAGCTGCTGGACATGATGAT
GTCCTGCCTGGTGGTGGCTCCCTGTGTGATCGCCTACTGGCGTGGCACCT
GGGAACTGATGTTCGTCTACCTGTTTCCCGGCAGCTTGCCGCTGTCTGCG
ATGGCCAGCTTTCTGATCGGCGGACTGGGGCACTTCTTCTTCACAGTCAC
ACAGAACTTCTTCAAGGAGCACATCCATCCGGACCGGAGGCGACTCACAT
ACTACGCCGTATCGCGTCTCTATACGGCCGTATTCGGCATCGTTTGCGTG
AATATGTGGCGTGGTGCCTGGCTGCTCTGCGATTGGCTGACCAGTGTGGA
CTCTCTGATCATTGTGTCCGTGGTCACGGCCATCGCGCTCATCTTTCTGG
TAGCCACACGCACTCTGCGGAACCTCGGAGCAGCTCCCTACACCGTTACC
ATGGATCACAAGAGTGACTACTTTGAGGTGGACACCATGTTCAAAATACC
CGGTTTTCATCAACCTGGCCTTTACATTTTGGACACCCTCTTCTCGGTCT
TTGTGATCGGCAGCCTGGTGGTCATCGCTTGCGCGGCGTCTGGGGAATCT
TTGACCTGCTGCTGTTCCCGGCGGACAAGGCCAAATCGGCCTGGGGATCG
CTGCTCATTGGATATCTGACGGTTTTGTGACCTTCCTTATTCACCCACTG
ATGAGTACGTTTGTCGTCGATCAGCGGATCCTCAAGCTGATCATATGCGA
CATCTACTATCTAATGACTTTCTTTGGAGCTGTGACGCTGGCGCGGCATC
TGGAATCTGCTGGATGTGTTATTTTGTTTCCAAATAACAAGCTGCTGAGC
TTCTGCTGAACACATATCGGTTCTTTTCCTGCTCCTCGCTGCCCTCAAAG
GCTCAATTCCATCCTGGGTGCGCGGGCGGTTTCATCACACCCAAGCGTGG
GCCGAAGCCAATTACAATACATGTGGTATGCACTCCTCTCCGAAGCCGAA
GAGGCGGGACTTCTAGCCACACTGCTGAGA
FMO02444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fusl-RF | 2908 | CG14021-RF | 1145..2269 | 5..1125 | 5195 | 98.1 | Plus |
| fusl-RE | 2754 | CG14021-RE | 991..2115 | 5..1125 | 5195 | 98.1 | Plus |
| fusl-RD | 2703 | CG14021-RD | 940..2064 | 5..1125 | 5195 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5331721..5332418 | 702..5 | 3475 | 99.9 | Minus |
| 2L | 23513712 | 2L | 5331508..5331660 | 853..702 | 715 | 99.3 | Minus |
| 2L | 23513712 | 2L | 5331275..5331447 | 1019..853 | 570 | 95.4 | Minus |
| 2L | 23513712 | 2L | 5331116..5331199 | 1117..1034 | 220 | 89.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:13:39 has no hits.
FMO02444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:11 Download gff for
FMO02444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14021-RA | 849..1987 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:22 Download gff for
FMO02444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fusl-RD | 936..2074 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:19 Download gff for
FMO02444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fusl-RD | 936..2074 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:19 Download gff for
FMO02444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5331263..5331446 | 854..1033 | 94 | <- | Minus |
| 2L | 5331508..5331660 | 702..853 | 99 | <- | Minus |
| 2L | 5331722..5332419 | 1..701 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:22 Download gff for
FMO02444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5331263..5331446 | 854..1033 | 94 | <- | Minus |
| arm_2L | 5331508..5331660 | 702..853 | 99 | <- | Minus |
| arm_2L | 5331722..5332419 | 1..701 | 99 | | Minus |
