FMO02445.5prime Sequence
1224 bp (1044 high quality bases) assembled on 2008-05-23
> FMO02445.5prime
CAGTCGACATGCTGGTGAAGAGGTTCCGCTACCCGGAGGACATCCTCCAG
CTGGAGTACGAACCGAACTTTGCGGTACGCGGCCTGCACTACGACGTGGA
AAAGGGGCTGCTGGTGAAACTGGACAGTTTCCTGCAGCTACAGCTGGGCT
CGGTATACAGGGGACGTACCAAAGTGGAGGCGGATGAGGTGCTGAAGCTC
TACCACAACCGCCTGCTGCCTATTGCCTACGTGGAGGGGCCGAACAATAG
CTACAGGCATAACACCAACTCCAAAATGGTGCAATTGGCCGACCTGTTTT
CTGTACCTGAAATGTGCCTGCTGTGCAATGTAATCGAATATTTTGAACGC
AATCGAATCGACTACAATCCAGAGATTGTTTTCCATGACACCAGGACCGC
CATGGGCTCCTGCCATCCCATTATGCACGGCAAGGTGATGCGGAACACTG
AGAAGTACATAGAACGAAACCCGAAGCTGGTCAAGTTCTTCGAGAAGCTG
CAGCAGGCGGGCAAGAATCTCTTTCTAGTCACCAATAGCCCGTACTCGTT
TGTAAACTGTGGCATGTCCTTTCTGGTCGGCGCCAACTGGCGTGATTTCT
TCGATGTGGTCATCGTGCAGGCCCGCAAACCAAAGTTCTTTACGGATGAA
TCTCGACCAATAAGGCTATTCGACGAGCGAACGCAGTCACACCTATGGGA
TCGGGTATTCAAGCTGGAGAAGGGAAAAATCTACTACGAGGGTTCGGTGA
GACAGCTTCAAGAGCTGAAGGGCTGGCGTGGTCACTCTGTGCTCTATTTC
GGAGATCATCCGTACAGCGACCTAGCAGATGTTACTCTGAAGCACAGCTG
GAGGACAGGAGCCATTATTAGCGAACTGGCTCACGAAATTAAAACCCTCA
ATCGTAAGGACTTCAAGATGAGCGCCAACTGGCTGCAAATGCTGACGCAG
CTCATCGAGGACACCCAGACGATGATAGCGAGGCAGCGCAGATCTGCCTA
AAGGAGTGATGGAGGAGCGGGATCAGTTGCGCCAACAAACGAAGACGTGT
CACGAGCAGTTTGCAGCGTTCCGCACCTAACCACAGCCCAGTTACTTCTC
AGAAGCCCTCTTCCGCTTGCGACTTAACAGCGACATAACTATCTGCTCAA
GTTCCCACCCACACTTATCCCAAGGGGTGTAATGCCTCGAAAATGCCTCT
CCACCTTTATCGTCCAGAGCATCT
FMO02445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1814-RB | 1880 | CG1814-RB | 490..1720 | 5..1211 | 5275 | 96.5 | Plus |
| CG1814-RA | 1929 | CG1814-RA | 539..1769 | 5..1211 | 5275 | 96.5 | Plus |
| CG1814-RC | 1673 | CG1814-RC | 283..1513 | 5..1211 | 5275 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9580451..9580747 | 257..553 | 1485 | 100 | Plus |
| 2R | 25286936 | 2R | 9580114..9580366 | 5..257 | 1250 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9580818..9581005 | 554..741 | 940 | 100 | Plus |
| 2R | 25286936 | 2R | 9581064..9581206 | 739..881 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 9581266..9581417 | 882..1031 | 660 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:18:10 has no hits.
FMO02445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:12 Download gff for
FMO02445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RB | 374..1596 | 1..1199 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:46 Download gff for
FMO02445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 281..1503 | 1..1199 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:59 Download gff for
FMO02445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1814-RC | 281..1503 | 1..1199 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:59 Download gff for
FMO02445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9580112..9580366 | 1..257 | 98 | -> | Plus |
| 2R | 9580452..9580747 | 258..553 | 100 | -> | Plus |
| 2R | 9580818..9581004 | 554..740 | 100 | -> | Plus |
| 2R | 9581066..9581206 | 741..881 | 100 | -> | Plus |
| 2R | 9581266..9581417 | 882..1031 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:46 Download gff for
FMO02445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5467617..5467871 | 1..257 | 98 | -> | Plus |
| arm_2R | 5467957..5468252 | 258..553 | 100 | -> | Plus |
| arm_2R | 5468323..5468509 | 554..740 | 100 | -> | Plus |
| arm_2R | 5468571..5468711 | 741..881 | 100 | -> | Plus |
| arm_2R | 5468771..5468922 | 882..1031 | 98 | -> | Plus |
