FMO02447.5prime Sequence
1219 bp (1024 high quality bases) assembled on 2008-05-23
> FMO02447.5prime
CAGTCGACATGTGCTTTCTACGATTTTTGGCCCAGGCCAGGGGCACCTTG
GGACGGCATCTGGCGGAGGCCTCACCAGTTGCCTGGGCTGCTGCTCCCGA
CGTTTCCGGCCGGAAATTACATCTGGTAATGGGCAACGAATCGTGTGACT
TGGACTCCGCCGTTTCGGCCGTCACTTTGGCTTTTGTCTACGCGCAGCGT
CATCGGGAGCACGACTATGTACCTATACTGAACATTCCTCGCCGGGACTA
CCCGTTGAAAACCGAGGTGGGCCACTTGTTTGTGAAATGTGGGATTGCCG
AGCCCGTGTTGCTCTTCCGAGACGATATTCCCCGGGAAGTGGTCCAGGAT
GTGAACGTTATTCTCGTGGACCACCATGTAAGCCCGCTGGCGCCAAATGT
TACTGAAATTTTGGATCACAGGCCCTTGGAGGACAGCAGTCCATCCTTCA
AGCAGCTGCCAACACTCTGCCAACTGGACATAGATGCCTCGGTGGGTTCC
TGCGCCACTCTGGTGGCCCAGCGGTATTTGGCAGAGGACCAACCCCGATC
CACTAGCGTGGCCCAGCTGCTGCACGCCACCATCGTGCTGGACACAATTA
ATTTTGCACCCGCGGCCAAGCGCTACGGGCCAAAGGACGAAGCCATGGTA
CAGAAGTTGGAGAGCGAGCTTAACCGTAAGGACGCTCAAAGAAGTAGCCT
TTTTGATGAGCTAGTGGCTGCAAGGGCTGATATTAGTAAGCTAACTCTCA
CCGAAGTTTTGCGCAAGGATATGAAGGTCTTGCAAACCGATCGTCAGTGG
TTCCCTTAGCTGGAATGCCCATCCTAGTCAGAGATTTTGTGGAGAAAAGC
GGCGCCGAAAAGCCGTTCGCGAGTTTGGCGTGAGAGTAACCTTTTGGTTA
TCCTGGGAATGTATGTATCCACCTGCCGATGGCCAGTGCAGCGTGACTGG
CCTTGATCTCTCTCTCGGGCAGCCAATTCGTTCACGCGTCCAGCAGGCAC
TGATGGAGTCTTACGATCAAAATTGGAGTTGCGACCTCACGAGGGTGACA
CCCGCTTATTGGGCGGCTGCCTTCTGCCCACCAACGTTCAGCCACAAAAG
CACATCCTGCATTGTTAACGAGGCCTGTCCTTGGAGTGACGGATTCAGCT
TGCATGTGACAGGGTGTACTCTCTTCTCAGGAAAGCCCGCCACATCGTGA
GGACTTCTCTCTCGTCGCT
FMO02447.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pn-RA | 1638 | CG3461-RA | 90..1216 | 9..1118 | 5015 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2181415..2182438 | 56..1070 | 4510 | 98 | Plus |
| X | 23542271 | X | 2181300..2181347 | 9..56 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:29 has no hits.
FMO02447.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:02 Download gff for
FMO02447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3461-RA | 207..1343 | 9..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:41 Download gff for
FMO02447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..1226 | 9..1127 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:43 Download gff for
FMO02447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pn-RA | 90..1226 | 9..1127 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:43 Download gff for
FMO02447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2181300..2181347 | 9..56 | 100 | -> | Plus |
| X | 2181416..2182504 | 57..1127 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:41 Download gff for
FMO02447.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2075333..2075380 | 9..56 | 100 | -> | Plus |
| arm_X | 2075449..2076537 | 57..1127 | 96 | | Plus |
