FMO02448.5prime Sequence
971 bp (795 high quality bases) assembled on 2008-05-23
> FMO02448.5prime
CAGTCGACATGGCGGGAATGAATGAGTACTCTAGCCTAAAATTTCAAGCG
GAGTATGAAACGCACGATGATCACCTGGGCAAGGAGCATCGGACTGGGGA
CCGGGATCAACATTTACCCGTGACCTATGGCCCTAGCAAACACTTGGGAA
GCAGCCTTGAAGAGCGCGAGAAGGCGATTGTGGACGTCGTCGGCGTACAG
TGGGTCTCCCTGGTCACCGAGAACCTGCTTAGCCATCCGTTTGTGGTGCT
GCGCCGCCAGTGCCAGGTGTACAATGCCTCGAGACGCTATCATTTGCATC
CCTTTCAGCTTCTGCCCAGCATCGTCCACCTGCACAGAAGGCAGGGACTG
ACGACCCTGTGGAAGGGCGTGGGCAGCTGCCTACTGGTGCGCGGCATGAC
GCTGGCCATCGACGACTTTATCTCGAAGGTGACCAGCTGGCCCAAGGATG
TGAATAGTCGCACCACGCTAAAGCGTTTCGGACAGCATCTCCTGCTCAAA
TGCATAAGTATCGGCCTGGTGGTGCCCTTCTATGCAGCTTCTCTCGTCGA
AACGGTGCAGAGTGATATTGCCAGCGAGAAACCCGGTCTATTCGATGTAT
TCCGGGAGGGAAGTCTGCGCTTGTTTTATTGGAGCTCTCCGCAAAAGGGC
CGTATGCTACCAGCCTGGGCTCTAATCGGGCCAAGTGTCTCCTTTGGCAT
CACCAAGTATCTGTTTAATCTCGTGATACGGGGCGTGTCCTCACGCATAA
TGCGCTTCGTATAAGAATTCCCAGGACGGCCAGGGTGGAAAGTATCAGGA
CACCCACGCTGGAACAACAGAATGCGACATCTATGCAGCTTATTGCTAAT
CATAAACACTGGAGTCTTGTTCTTTCCGTTCGAACGATTCTCAACCCGTC
TGCAATGGCATGAACGAACTTTTCGCGCGCACACCCTCGCGCAATGGCTT
CACGAGTGTTCGTATACCATT
FMO02448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8931-RA | 1454 | CG8931-RA | 149..1053 | 9..910 | 4195 | 98.1 | Plus |
| CG5755-RA | 1553 | CG5755-RA | 395..962 | 186..753 | 440 | 72.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15984188..15984538 | 152..502 | 1755 | 100 | Plus |
| X | 23542271 | X | 15984593..15984978 | 502..884 | 1520 | 96.4 | Plus |
| X | 23542271 | X | 15984014..15984127 | 41..154 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 18096962..18097529 | 186..753 | 425 | 71.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:24:21 has no hits.
FMO02448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:03 Download gff for
FMO02448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 143..1051 | 2..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:31:22 Download gff for
FMO02448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 145..1053 | 2..910 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:40 Download gff for
FMO02448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8931-RA | 145..1053 | 2..910 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:40 Download gff for
FMO02448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15984014..15984127 | 41..154 | 100 | -> | Plus |
| X | 15984191..15984538 | 155..502 | 100 | -> | Plus |
| X | 15984594..15984995 | 503..901 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:31:22 Download gff for
FMO02448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15878047..15878160 | 41..154 | 100 | -> | Plus |
| arm_X | 15878224..15878571 | 155..502 | 100 | -> | Plus |
| arm_X | 15878627..15879028 | 503..901 | 96 | -> | Plus |
