FMO02449.5prime Sequence
1183 bp (1019 high quality bases) assembled on 2008-05-23
> FMO02449.5prime
CAGTCGACATGGGCTCGTTAACGGGAATGCATATATCACACTGGTTGCTG
TGGACGTGCCTGCTGCTCCTTGGCGCAGCGGGAACGGATGCGTCAGTTGA
CTACTTTGCCTATGCTCCCGGTAAGTGCGAAGTGTCCATTTCGGATGTAA
TCCAAGGCATGATTACCACTGAGGCTGGCGTCATCCTCGGAAGGCCCCGT
CCTTCGCAAACAAAGCTGCTGCGGTACGATCTTTATACGCCCCTCAATCC
GGAGGAGCGTCAACTGCTGCGACCAGGAGATCTGACCATGCTAAGGAACT
CGCACTTCAATCCGAAATGGCCAGTTAGGGTCTCCATTCATGGCTGGGCG
GGAAAGAGTGTCACCTGCTCGAATGCTGCCATCAAGGATGCCTACCTGTC
CCGGGGCAATTACAACGTCATAATTCTGGACTGGAGTCGCCAGTCGTTGG
ACATCAGCTATCCACGTGTGTCTAAGCAGCTTCCGTCGATAGCTGCCAAT
GTGGCCAAAATGTTGCGGTTTCTTCATGACAACACAGGAGTTCCCTACGA
GCAAATCTATATGATTGGGCACAGCGCCGGCAGTCACATCTCTGGATTGA
CTGGAAAGCTGTTAAGGCCGCATCGCCTTGGTGCTATTTTCGCCTTGGAT
CCCGCTGGTCTCACTCAACTCAGCCTGGGACCCGAAGAGAGGCTGGACGT
CAACGATGCCCTGTATGTGGAGTCAATTCACACGGATCTAACGCTGCTCG
GCAATCCGAGTACTAAGCTCAGTCATGCCTCCTTCTTTGCCAACTGGGGC
CTCGGGCAGCCACATTGTCCCAACGCCACGGCCACGGAGTTTGATTTTGT
CTGCGACCACTTCGCGGCCATGTTCTACTTTGCCGAGTCAGTCCGGCAAC
CGAAATCATTTGCCGCATTGCGCTGCAGCTCAGCGAAATCGTGCTATCGG
CCACCTGCACTGCACGTCGAGCAGCGAAAATATGCAGTCAATACATGCAC
CGGCACGAGTTCATGGGCCGGTGAACCGGCAGTCCCCAAAGAGTATCTTT
TTATCTGGACACACGCCGAGTCTCGTATGGCACCAGGAATGGGCCTGATC
CAATAACGAACCGGCGTCCACATATTCGGAACGCAACCGGGTCAATGGCC
AGCTTCTAGACAATCGTTGGGGCGCGCGGCCCA
FMO02449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sxe2-RB | 1627 | CG4979-RB | 273..1406 | 9..1129 | 5085 | 97.6 | Plus |
| sxe2-RA | 1583 | CG4979-RA | 229..1362 | 9..1129 | 5085 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16086184..16086905 | 325..1040 | 3235 | 98.8 | Plus |
| 3R | 32079331 | 3R | 16085878..16086122 | 85..329 | 1225 | 100 | Plus |
| 3R | 32079331 | 3R | 16085733..16085808 | 9..84 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:20:49 has no hits.
FMO02449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:18 Download gff for
FMO02449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4979-RA | 225..1331 | 3..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:09 Download gff for
FMO02449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1331 | 3..1102 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:35 Download gff for
FMO02449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sxe2-RA | 225..1331 | 3..1102 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:35 Download gff for
FMO02449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16085878..16086121 | 85..328 | 100 | -> | Plus |
| 3R | 16085729..16085808 | 3..84 | 95 | -> | Plus |
| 3R | 16086188..16086970 | 329..1102 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:09 Download gff for
FMO02449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11911451..11911530 | 3..84 | 95 | -> | Plus |
| arm_3R | 11911600..11911843 | 85..328 | 100 | -> | Plus |
| arm_3R | 11911910..11912692 | 329..1102 | 97 | | Plus |
