FMO02450.5prime Sequence
1220 bp (1027 high quality bases) assembled on 2008-05-23
> FMO02450.5prime
CAGTCGACATGGAGGAGCTGCAGGATGCCAGCATCCACCATATGACCGCA
AAGGTAATCGCGGCCATCAAGAACACTAAGAGCTACGAGCCCATCTACAA
GGAGCTGCAGAAGCTGGTCTGCAATCCCAGCGTAGATACTCACGATATGC
GCAACACCCTCGAGGATGCCATCAAGAGCGCCGGACTGGAGACGGAGATC
CGGAATATTGTCTACAACCTGGTCCGCACGCGGCTGTCGAAAACAGATGA
CAAAAACCTGGCCAACAAACAGGGAGCGAAACCCACCGTTAGTGATCCAC
TTGGATATTTAAAAAGAGCTGGTGTGCTTTGGGATCGAAGGGTTAGGAAG
AGTTTGAATGCCATGTGTACAGAGCTGAAGGTTCCATTGCATGGACAACC
AAGGATCAGTGCTGATCGCGAGGACTTTATGGCCAAGTGGAACGAACTGA
GCAACTACAATATGGATCTGGCCAACTATAGGCCTGTTTACGCTCCAAAG
GATTTACTGGAGGTGCTACTCTCGCTAAAAGGACCCGCCAAAACCACTGA
AAATACAGATCAAATCCCCCAATGGGAGTTCTCCCACATTGCACTACCTG
TGAAAAATCTTTTCGAGCTGCGTGCCCACTACGCGGATCTGCTGCGAAGT
GATAGCTATTTGGGAGTGCCGGATCTTACGGTTCAGTGCCAGAGGATTCT
GGAGGCCAGGCATGCGCCCATGTGCCAGCAGTTTCTGAAGAAGGGCTGCA
CACCCGCACCTTATAGGGGAGCTCTCTGGGCTTCGGTGCTGGACAGCAAG
CTACATGACTACGATATTGAGTACTGGCAAAAGCTGCGCAATGCCGTTTG
GACTACGGATCACATCGTTGACAAACTGGTCTTCAAGGACATTCAGTTGA
CGGCCTCCAACGACGACCAGTACTTTGTGTTCGAGGACGTGCTCTACCAG
GTGCTGCTCTGCTTTTCTCGGGACACGATATCGTGGATGTGTGATACGAG
ACGTTTCCGTGAAGCAGACTACGAAGTCCTCCATCGGGTGTGGGTGCCTC
AGCATCTGCATGTTTGCCGCCCCTTTTGTTATCTGATGACCGCCGGGTTA
ACTATAAGTCCAGCTCTATATCGACTGCCATCGCTGAACACCATAACCGC
ACTCCAGGATTGCCAGCTTGTTCCTGTCTCTCGGACCAGCTGTGGAAACA
TACGACCCGAGAATAATGGT
FMO02450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7742-RC | 1894 | CG7742-RC | 266..1375 | 4..1096 | 5105 | 98.2 | Plus |
| CG7742-RD | 2119 | CG7742-RD | 491..1600 | 4..1096 | 5105 | 98.2 | Plus |
| CG7742-RA | 1768 | CG7742-RA | 140..1249 | 4..1096 | 5105 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5214317..5214591 | 278..4 | 1360 | 99.6 | Minus |
| 2L | 23513712 | 2L | 5213387..5213640 | 813..560 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 5213837..5214024 | 465..278 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 5213132..5213332 | 1009..813 | 840 | 98 | Minus |
| 2L | 23513712 | 2L | 5213690..5213784 | 559..465 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:16 has no hits.
FMO02450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:19 Download gff for
FMO02450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7742-RA | 84..1183 | 1..1085 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:48 Download gff for
FMO02450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7742-RA | 137..1236 | 1..1085 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:02 Download gff for
FMO02450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7742-RA | 137..1236 | 1..1085 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:02 Download gff for
FMO02450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5214317..5214592 | 1..278 | 98 | | Minus |
| 2L | 5213388..5213640 | 560..812 | 100 | <- | Minus |
| 2L | 5213690..5213783 | 466..559 | 100 | <- | Minus |
| 2L | 5213837..5214023 | 279..465 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:48 Download gff for
FMO02450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5213837..5214023 | 279..465 | 100 | <- | Minus |
| arm_2L | 5214317..5214592 | 1..278 | 98 | | Minus |
| arm_2L | 5213388..5213640 | 560..812 | 100 | <- | Minus |
| arm_2L | 5213690..5213783 | 466..559 | 100 | <- | Minus |
