FMO02453.5prime Sequence
1180 bp (1007 high quality bases) assembled on 2008-05-23
> FMO02453.5prime
CAGTCGACATGGCCACATTCACACAGGACGAGATCGACTTCCTGCGCAGC
CATGGCAACGAGCTGTGTGCCAAGACCTGGCTGGGATTGTGGGATCCGAA
GCGGGCTGTGCACCAGCAGGAGCAGCGCGAACTGATGATGGACAAGTATG
AGCGGAAGCGATACTACCTGGAGCCGGCCAGTCCTCTTAAGTCGCTGGCC
AATGCGGTCAACCTGAAGTCGTCTGCTCCGGCGACGAACCACACTCAGAA
TGGCCACCAAAATGGGTATGCCAGCATCCATTTGACGCCTCCTGCTGCCC
AGCGGACCTCGGCCAATGGATTGCAGAAGGTGGCCAACTCGTCGAGTAAC
TCTTCTGGAAAGACCTCATCCTCGATCAGTAGGCCACACTATAATCACCA
GAACAACAGCCAAAACAACAATCACGATGCCTTTGGCCTGGGTGGCGGAT
TGAGCAGCCTGAACAGCGCCGGTTCCACATCCACTGGAGCTCTTTCCGAC
ACCAGCAGTTGTGCTAGCAATGGCTTCGGTGCGGACTGCGACTTTGTGGC
TGACTTTGGCTCGGCCAACATTTTCGACGCCACATCGGCGCGTTCCACAG
GATCGCCGGCGGTGTCGTCCGTGTCCTCAGTGGGTTCCAGCAATGGCTAC
GCCAAGGTGCAGCCCATCCGGGCAGCTCATCTCCAGCAGCAACAGCAGTT
GCAGCAGCAGCTGCATCAGCAGCAGCTCCTCAATGGCAATGGTCATCAGG
CACTGAGAACTTTGCCGACTTCGATCACGCTCCCATCTACAATGCAGTGG
GTGCTCCCTTGCAGAACGGCCATACGACCAGTCCGCCCAAGGGCGGAAAT
GCAGCGATGGCGCCCAGTGAGGATCGATATGCCGCTCTTAAGGATCTCGA
CGAGCAGCTGCGAGAACTGAGGCAGCGAAGCGCACAGAGACGCCCACGCC
CACCAGTGCATGTCAGCACAGATGCCTTTGGTGAGCCTCACACATCAAAT
CCCTCAGGCAGCAACAGCAGCAGCTCAGCAGCATGTGTGATCAATCAGCA
GCAGCAACAGCAGCACACAGCGATCCTATGCAGTTGACCCTCATACATGC
CTACGGCGCCAGTTCCACAGTCAATGGAACTCCTCAGAGAGACGGAGACA
GGGAGCTTCTATTCAACAGTGCCATCTCCA
FMO02453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| drongo-RI | 2625 | CG3365-RI | 1214..2356 | 9..1116 | 4840 | 96.6 | Plus |
| drongo-RH | 3518 | CG3365-RH | 1214..2356 | 9..1116 | 4840 | 96.6 | Plus |
| drongo-RC | 2672 | CG3365-RC | 371..1513 | 9..1116 | 4840 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 836544..837338 | 802..9 | 3925 | 99.9 | Minus |
| 2L | 23513712 | 2L | 835386..835548 | 958..800 | 635 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:23 has no hits.
FMO02453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:22 Download gff for
FMO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3365-RC | 112..1220 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:51 Download gff for
FMO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 364..1472 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:08 Download gff for
FMO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| drongo-RC | 364..1472 | 1..1080 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:08 Download gff for
FMO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 835353..835547 | 801..985 | 94 | <- | Minus |
| 2L | 836546..837342 | 1..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:51 Download gff for
FMO02453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 835353..835547 | 801..985 | 94 | <- | Minus |
| arm_2L | 836546..837342 | 1..800 | 99 | | Minus |
