FMO02454.5prime Sequence
1206 bp (1065 high quality bases) assembled on 2008-05-23
> FMO02454.5prime
CAGTCGACATGAGCTACGATGATGATGACTATCCGGCGGACACGTTCCCC
AAGGACTTTGGCTACCGGGCCTACAACCAGGATGGCCTGGAACTGGAGCC
CAATGCAACGGGCAGCAGCGAGACAAAGCCGCGCATTCTGCTGATGGGAA
TGCGCAGATCCGGCAAGAGCTCCATCCAAAAAGTGGTCTTCCACAAGATG
TCGCCGAACGAGACGCTCTTCCTGGAGTCGACCAGTAAGATCGTGAAGGA
CGACATCAACAACTCCAGCTTTGTGCAGTTCCAGATCTGGGACTTCCCCG
GCCAGATTGACTTCTTCGAGCCGACCTTTGATTCTGACATGATCTTTGGA
GGCTGTGGAGCCCTGGTCTTTGTCATCGATGCCAAGGATGACTACAACGA
GGCGCTGACCAAGTTCAAGAACACAGTGCTGCAGGCCTACAAAGTGAACA
AGCGCATCAAGTTCGAGGTGTTTATACACAAGGTGGATGGAATTAGCGAC
GACTCGAAAATGGAATCGCAGCGGGACATACACCAGCGGTCGTCGGATGA
CCTTAACGAGGCTGGCCTCGATCAGATCCACCTGAGTTTCCATCTGACCT
CCATATACGACCACTCCATCTTCGAGGCCTTCTCCAAGGTGGTGCAGAAG
CTGATTCCCCAGCTTCCGACGCTGGAGAATCTGCTGAACATTTTTATACC
AAACTCCGGAATAGAAAAAGCCTTTCTGTTCGATGTGGTTTCCAAAATTT
ACATAGCCACGGACTCGTCACCAGTCGATATGCAGACGTATGAGCTCTGC
TGCGATATGATTGACGTGGTCATTGATCTGTCCAGCATATACAGCTCCGA
AGAACCGCCTTTGACAGCGGGAGCTCTAGTCTCATCAAGTTAACACACAC
GATACTCTACCTGCGGGAGGTGAACAGTTCCTGGCCCTGGTCTGCATCCT
GCGCGAGGAGACTTCACCGGCAGGCGTCATCGACTACATTTCATCTGTTT
CGCGACGCCATCAGCGAGGTATTCGAGCTGCGGCTAAGGCGCCAGAGCAG
CTGGAAACACGAACAGGACGACGAGGATTCTGGGTCGATGACAGACCTGG
ATTTCCCATGGCCCGCAGCAAGGTGAATCCCGAGCGCACCCAATTTATGG
CAGCCTTCCAGAACATTCGTTTGGGCGCCGCGCCAGGGTAAGTGGCCATA
ATCCTG
FMO02454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RagC-D-RA | 1558 | CG8707-RA | 176..1328 | 8..1145 | 5100 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8162768..8163241 | 484..11 | 2370 | 100 | Minus |
| 2R | 25286936 | 2R | 8162488..8162708 | 701..481 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 8162286..8162428 | 844..702 | 715 | 100 | Minus |
| 2R | 25286936 | 2R | 8162013..8162227 | 1046..842 | 585 | 93.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:29 has no hits.
FMO02454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:23 Download gff for
FMO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8707-RA | 182..1296 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:53 Download gff for
FMO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagC-D-RA | 169..1283 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:12 Download gff for
FMO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RagC-D-RA | 169..1283 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:12 Download gff for
FMO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8161939..8162224 | 845..1116 | 91 | <- | Minus |
| 2R | 8162286..8162428 | 702..844 | 100 | <- | Minus |
| 2R | 8162488..8162706 | 483..701 | 100 | <- | Minus |
| 2R | 8162770..8163243 | 8..482 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:53 Download gff for
FMO02454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4049444..4049729 | 845..1116 | 91 | <- | Minus |
| arm_2R | 4049791..4049933 | 702..844 | 100 | <- | Minus |
| arm_2R | 4049993..4050211 | 483..701 | 100 | <- | Minus |
| arm_2R | 4050275..4050748 | 8..482 | 99 | | Minus |
