FMO02456.5prime Sequence
1207 bp (1035 high quality bases) assembled on 2008-05-23
> FMO02456.5prime
CAGTCGACATGCGTTTGAATGAACCAGCTGCAAGAACGCGACCCAGAACT
AAATCAACGACAGACGCCACCAAGTTCTCATCATCCAGGGGTGACCTTCA
CCTCGATTGCGCCGTGCCCAACCTGATCAGGCTGCTCCTCCTCATCGCAA
CGATCATGGGCTCCGGACTCGTCCAGGCCAAGACAATTTACGACTCGGTT
AACATGATTCAGTCGCTGGATGCCTTGGTTGAGCCACGGGAAACGACCAA
GGTTCCGCTGCAAACAACGCCAGCCACGCCCCCCACTGCCCACGCCCACA
TCCACAACCAGGTGTCCACGTTACGGAGTAGTTACGAGGATTCAGATGAT
GGCGTAGATGGCGATTATGTCATCCCAGAGAGCCAGACATCTACGGTGGC
GATCCTGGATCAGGATTCCTCCATGAAGGGCCAGGACATGGAATCGTTAT
CCCTGCAGGCAGGATCGGGCACAGTTTCACCAAAGAGCAGCCCCGATTCG
TCCGGACACAAGAAGAACGCCTCCTTCCAGCAGATTGGCAGCCAGAATGT
TAACGCCTTAGTGCCGGCCACAGTGGCCACCACTTCATCCGGCCTCCCGT
CGAGCAGCAACGCCTCCTTGGCCACGCCCACGGAGCCGGCGAGGAACCGG
AGCACCGGACTCGTCCGCAACTCCGCTGTCAAGGTGGACAGCAAGCATCC
ACTGTCCAAGGGCCAGAAGACGGACGCACCCATGCTGAACTACATCTTCG
ACACGTTCTCTTCGGCCAATAAGCACCATCATCACGATCAGAGGTATGGC
CCCCACTTCGAGGATGTGCAGCGGATTGGTCAGGCCACCAATCTCACCGT
GCAGGCGGGCTCCAGCATTCACCTGAACTGCAGATCTCACTGCTGCAGAT
AGACTGTCTCTGGGTGCGGCACAACACGCAGACGAGGGCAAGGACATGGC
AACGCCCTGACTGCTGACAGTGGGCATGCACACGTATACGGTGATAAGCG
CTACAGATGAGTTCAGTACCCAACACTGGCGACTGAGATACAATGTGAAG
AAGACGACGAGCTATTCTACGATGCGAATCTCACGCATCCGCCAGCGTCA
TCCAATCACCTGCCGGTTATGTCTCGAAGAGTTAGTATTGACAGTGCGAA
TCGGTCCGGAAGTACTCAGAATCGAATCCACGCCTACAGCCTCCCTGTGG
GTAGGTC
FMO02456.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr20-RA | 2717 | CG12191-RA | 579..1697 | 9..1105 | 4980 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 854585..855044 | 795..336 | 2300 | 100 | Minus |
| 3L | 28110227 | 3L | 856343..856670 | 336..9 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 854305..854412 | 898..792 | 490 | 99.1 | Minus |
| 3L | 28110227 | 3L | 854038..854137 | 1005..911 | 270 | 94 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:46 has no hits.
FMO02456.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:26 Download gff for
FMO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12191-RA | 570..1698 | 9..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:04 Download gff for
FMO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 579..1707 | 9..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:42 Download gff for
FMO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr20-RA | 579..1707 | 9..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:42 Download gff for
FMO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 854296..854410 | 794..905 | 97 | <- | Minus |
| 3L | 854587..855043 | 337..793 | 100 | <- | Minus |
| 3L | 856343..856670 | 9..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:04 Download gff for
FMO02456.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 854296..854410 | 794..905 | 97 | <- | Minus |
| arm_3L | 854587..855043 | 337..793 | 100 | <- | Minus |
| arm_3L | 856343..856670 | 9..336 | 100 | | Minus |
