FMO02458.5prime Sequence
1212 bp (1043 high quality bases) assembled on 2008-05-23
> FMO02458.5prime
CAGTCGACATGGCCACGCGAGGGGCGAATGTGATTTGGTTTCGCCATGGA
TTGCGCCTCCATGATAATCCCGCTCTATTGGCCGCCCTCGCCGATAAGGA
TCAGGGTATAGCCCTAATTCCCGTTTTCATATTCGATGGAGAGAGTGCAG
GTACCAAGAATGTGGGTTACAATCGGATGCGTTTCCTCCTGGACTCGTTG
CAGGACATCGATGATCAGCTACAGGCGGCAACTGATGGACGTGGACGCCT
CCTGGTCTTCGAGGGCGAACCGGCTTATATCTTCCGCCGGCTACATGAGC
AAGTGCGTCTGCACAGGATTTGCATAGAGCAGGACTGCGAGCCAATTTGG
AATGAGCGCGATGAAAGCATCCGTTCTCTATGTCGGGAGCTGAATATCGA
CTTTGTCGAGAAGGTATCACACACGCTTTGGGATCCGCAATTGGTGATTG
AGACCAATGGTGGCATTCCACCGCTGACCTACCAAATGTTCCTGCACACG
GTGCAAATTATTGGGCTTCCACCGCGTCCCACCGCCGATGCTCGACTAGA
AGACGCCACCTTTGTCGAGCTGGACCCCGAGTTCTGCCGAAGTCTTAAGT
TGTTCGAGCAGCTGCCCACGCCGGAGCACTTCAATGTGTATGGAGACAAC
ATGGGCTTCCTGGCCAAGATTAACTGGCGCGGCGGAGAAACACAGGCCTT
ACTTCTGTTGGATGAGCGTCTTAAAGTGGAGCAGCATGCGTTTGAGCGTG
GATTTTATCTGCCCAACCAGGCACTGCCCAATATCCACGACTCGCCAAAA
TCGATGAGCGCCCATCTGCGCTTTGGTTGCCTTTCGGTACGTCGCTTCTA
CTGGAGCGTCCACGATCTCTTCAAGATGTCCAGTTGCGCGCCTGTGTGCG
GGCGTTCAGATGACTGGCGGCGCGCACATCACGGGACAGTTGATCTGGCG
AGAGTACTTCTACACCATGTCGGTGAACATCCAACTACGATCGCATGGAG
GGCAATGACATTCTGCTGAGCATCCCGTGGCTAAGCCGAACGAAATCTTC
TGAGAGCTGGCATTAAGGCAACGGGATTCTCGCTCATCGACGGCCATGCA
CAACTCTGGCGAGGATGTCACCATAGCTTGCCAACCGGCACTTCCACGCG
CGTTGGCAAGCTGGGACAGGACGCCACCTTCTGAAAATACTGCGGGATGC
CGAATGTTGGCG
FMO02458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cry-RA | 1896 | CG3772-RA | 188..1297 | 9..1106 | 5165 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19213983..19214592 | 494..1094 | 2520 | 96.9 | Plus |
| 3R | 32079331 | 3R | 19213481..19213827 | 148..494 | 1735 | 100 | Plus |
| 3R | 32079331 | 3R | 19212341..19212485 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:29:01 has no hits.
FMO02458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:14 Download gff for
FMO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3772-RA | 144..1268 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:28 Download gff for
FMO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cry-RA | 144..1268 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:44 Download gff for
FMO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cry-RA | 183..1307 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:44 Download gff for
FMO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19212336..19212482 | 1..150 | 97 | -> | Plus |
| 3R | 19213484..19213827 | 151..494 | 100 | -> | Plus |
| 3R | 19213984..19214592 | 495..1094 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:28 Download gff for
FMO02458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15038058..15038204 | 1..150 | 97 | -> | Plus |
| arm_3R | 15039206..15039549 | 151..494 | 100 | -> | Plus |
| arm_3R | 15039706..15040314 | 495..1094 | 97 | == | Plus |
