FMO02462.5prime Sequence
1235 bp (1058 high quality bases) assembled on 2008-05-23
> FMO02462.5prime
CAGTCGACATGACGGCCGTAGAGCCAGCGACAAAGAAGAAGCGCATCTCG
AAGAAGAACAAATCGGCATGGCGCAAAACAGACATCCAGGATGTCGAGCA
GTTCCTCGAAGATCAGCGCCAGGAGGAGCGCGTTGGAACGTTCGCGGATA
AACAGGATGAGGATCTGTTCGTTGTGGACTCCAGCCTCCCGAAGACCAAG
GCCACCGTTCTGAGTGTGAAGCAAAAGCGGAAGCTGAATGCCAAGAAGCC
CATGCGCAGTTACCAGGCTTTGGAGAACACATCCAAAGTCCAAGATCCCA
TTGCCAAGCGCAACCATGTGCGCCAGAAGAAGAACGGACGTAACATCGAG
CTGGAGGTGTGCAATCCAACCAAGCCGCGCCATCGCCAGGCCAACAGCGA
TCGAGCTCAGTACTACGTAAAACTGGAACAGCGTCTGGCCGACAAGAAGA
ACAAGAAGCTTGATGTCGAGAAGGACATCTGGCAGGAGGTGGATTTTCGC
GACGAGATTCCTGGACTCAAGGACGAGAAGGGTTGGATCAGTCGCGAACT
GGCACTGCACACAGCTGGAAATATTGGCAAGAAGGTGGTGAAAACTCACG
CTAGTCTGCACCACAAAACCACCAAAGCCAAGAAATTCGAACTCCCGCAT
CCGGGCATGAGCTACAATCCCGCACCCGAGGATCATCAGGCGCTTATTGA
TCAGGTGGTGGAACGCGAGGAGGGCATCATTAAGAAGGAACAGCACCTTA
AGCGCGTGACCACCAGCATGTTCTCCAAGGTGACGCCCGAGGAGAGAGAT
CGTCGTCGCCTAAATGAAATGAGCCAAGGCATGGACGAGGAGGAGGGTAG
TGAGCTCGATGAGGATGTCCAAACGAATGGGAAGAAAAAGGAGGACGATG
ATGAAAAGCCATATCACACAATCAACGCTCCCGTGGAGAACAAAAAGAGA
GCAGCAGGCTCGCCGCACGAGCTCAAGCAAAGGAGCTGGCGGCGTCAACA
GAGCTCAGGAGGAAGCTCAGGCACAGAACGGCTGACCTGATACGCATCAA
ATCGATCGCCACGAGCTAGACGATGGAGGAGGAGACCTGAATGATCTAAA
GAAGCGCCCGCAAGGCACGCGCCCGAAAGTCCAGTTTGAACCGAAAGGCC
TTGGGGTTCAAGTTCCAGGACGAACTAACTTATTCTGGCCGCGAGAGAAA
TGCGCGGAAAATTCGTGCCGCACACAGTGTGGGAG
FMO02462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1785-RA | 1885 | CG1785-RA | 94..1262 | 9..1170 | 5280 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8715835..8716251 | 632..1044 | 1720 | 96.4 | Plus |
| X | 23542271 | X | 8715451..8715773 | 310..632 | 1615 | 100 | Plus |
| X | 23542271 | X | 8715221..8715395 | 136..310 | 875 | 100 | Plus |
| X | 23542271 | X | 8715029..8715156 | 9..136 | 640 | 100 | Plus |
| X | 23542271 | X | 8716313..8716378 | 1044..1108 | 190 | 89.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:59 has no hits.
FMO02462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:31 Download gff for
FMO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 71..1203 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:50 Download gff for
FMO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 86..1218 | 1..1129 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:59 Download gff for
FMO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1785-RA | 86..1218 | 1..1129 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:59 Download gff for
FMO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8715021..8715156 | 1..136 | 97 | -> | Plus |
| X | 8715222..8715395 | 137..310 | 100 | -> | Plus |
| X | 8715452..8715772 | 311..631 | 100 | -> | Plus |
| X | 8715835..8716251 | 632..1044 | 97 | -> | Plus |
| X | 8716314..8716398 | 1045..1129 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:50 Download gff for
FMO02462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8609054..8609189 | 1..136 | 97 | -> | Plus |
| arm_X | 8609255..8609428 | 137..310 | 100 | -> | Plus |
| arm_X | 8609485..8609805 | 311..631 | 100 | -> | Plus |
| arm_X | 8609868..8610284 | 632..1044 | 97 | -> | Plus |
| arm_X | 8610347..8610431 | 1045..1129 | 91 | | Plus |
