FMO02463.5prime Sequence
1210 bp (1018 high quality bases) assembled on 2008-05-23
> FMO02463.5prime
CAGTCGACATGGCGAACGTGAAGATAGTGGAGTCCAAGCTGGACATATTC
CACGCACCGCAGACACATTCCTTGGCCCATGCCGTAGAGTCATCCTTTAC
GGCGGAACGGGGAACTCTCGCCTGGCAGTTTGCCCTGATCTACGGGGATG
TGGATGAACTACGGCAAAGAAGTGTTTCCAGAGGCAACTGTGCCGTTCTG
GAGCACAATGCCCGATTCATATACTATCTGGTGACCAAGTCGAGTCTCTA
CGAGGCCAGCACTTACGGCGATGTCCAGGCAGCTTTGATCTGCATGCGGG
AGCATATGCGCAACCATGAAATCACCAAAGTGGCTATGCCCCGAATCTGC
TGCGGCAACGATGGACTTGAATGGAAGCACGTGAAGCGTCTGGTGCAACA
GACCTTCTCCCAGAGCGAGTATCCCATCGAGATACTCATCTGTGAGCACG
AAGACATGTCCAAGGAGCTGGCTGCTCCCAAGTGTCAGATTACGGAGGCC
AGGGGGAACCTGTTCAGCGCCCCGGAAAACTACGCCTTAGTGCACTCTGT
CAGTGCGGACTTCGCTATGTGTGCGGGCATAAATCTGCAGTTCCGCTGCA
AATTCGGACAAGTGGATGAGCTGAAGCGCCAACACAAGCATACCGGAAAT
GTGGCAGTTCTGGAGCAGGATGGTAGACATATCTACAACCTGGTGACCAA
GGAGCGCAGCCACGAAAAGTGCACTTACGCAGCTCTCTACTACGCATTGC
TGGCCATGCGGGAACATATGAGGGAGCACGGAGTGACCAAGTTGGCCATT
CCCAGACTTGGATGCGGCATCGACCGTTTGGATTGGTTGCGCGTGCGGAG
TCTGCTGGATCTGGTTTTCGCCGAGGATAGCGTGGACATAATTGCATTCT
CTACACACCGCCACAAATGGTTAAGGACACGTTGACGTGGTTCGTCCCAC
CTGCCGGCACATGAGACATCCATTTGCCATCGAGGTCCGTTAGTGATCAG
AATTTCGCTCATCGCGAAAGACTCCCTTTGCAGCTTTCTAGACCATCGTT
GGCCGCCGGGTCCAGGTAGTGAATAATCATATCGTATCTATCTATCCACT
AGCTAGGAGATTCTGTTGACTATGCCTGATTCCACAATAACGCAGGCGTA
CCGAGCGCCTGGACAATCGAAGGGATCGAGAGTCTTACTGGATCATACCA
CGGGAAGCGT
FMO02463.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33056-RE | 1448 | CG33056-RE | 218..1247 | 8..1029 | 4890 | 98.8 | Plus |
| CG33056-RD | 1558 | CG33056-RD | 328..1357 | 8..1029 | 4890 | 98.8 | Plus |
| CG33056-RB | 1519 | CG33056-RB | 289..1318 | 8..1029 | 4890 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21198881..21199185 | 770..466 | 1525 | 100 | Minus |
| 3L | 28110227 | 3L | 21199995..21200295 | 308..8 | 1505 | 100 | Minus |
| 3L | 28110227 | 3L | 21198500..21198729 | 995..770 | 940 | 97 | Minus |
| 3L | 28110227 | 3L | 21199246..21199405 | 467..308 | 770 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:11 has no hits.
FMO02463.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:33 Download gff for
FMO02463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RE | 188..1226 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:35 Download gff for
FMO02463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 280..1318 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:13:51 Download gff for
FMO02463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33056-RB | 280..1318 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:13:51 Download gff for
FMO02463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21198500..21198728 | 771..995 | 97 | <- | Minus |
| 3L | 21198881..21199183 | 468..770 | 100 | <- | Minus |
| 3L | 21199246..21199404 | 309..467 | 98 | <- | Minus |
| 3L | 21199995..21200302 | 1..308 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:35 Download gff for
FMO02463.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21191600..21191828 | 771..995 | 97 | <- | Minus |
| arm_3L | 21191981..21192283 | 468..770 | 100 | <- | Minus |
| arm_3L | 21192346..21192504 | 309..467 | 98 | <- | Minus |
| arm_3L | 21193095..21193402 | 1..308 | 99 | | Minus |
