FMO02465.5prime Sequence
1184 bp (1000 high quality bases) assembled on 2008-05-23
> FMO02465.5prime
CAGTCGACATGAAGGCTAGCAAGACACGGGCTGTGCGCCTCACCAGTTTG
ACGGAGGACGTGGCCGCCGTACCGGAAGATGCACCATTCCGTGCACGCCT
GCACGTCCTCTTCGCCCAGATCGAGCGGGAGTTCGAGCAGCTGTATCTGG
AGAACCAGGCCCTGCAGGAGAAGCTAGACATAGCCACCACCACCAAGGAG
TCATTGATTCCACCCGATGCCAGATCCGCAGCAGGAGGTTCAATGAGCAC
TCAGGCCTCATCCGCAGCTTTGGCCACGCCTGCAACCCAGACGGATGAGG
TGGCGGGCAGCTTCCTGGCTGCAGCATCCAGTACACACAAGAGCTTGAAG
GCCAAACTAAGCAGCGCTACCGGCGGCAGCAAAGCCAAGGCCAGCAACAA
GATCAAGGCCCAAACCAGCCGCATTGTGTCCAGCTTTAAGGCGCCCACAG
TGGTCAGCACGGTGGTCCGAGAATTCGGCGGCCACAAGGATGGCATCTGG
CAGGTTGCCGCCAAGGCGGGACAACCCATCATTGGCACCGCCTCCGCCGA
TCATACGGCCTGCATCTGGGGCGTGGAGAGCGCCAGGTGCCTTTTGCAGT
ACCAAGGGCACGCCGGCTCCGTAAACTCCATCAAGTTCCATCAGCAGCGA
GATCTTGTGCTCACCGGCAGCGGGGATGGTACTGCCCACATCTGGCAGGC
GGCCGTCAACTGGGAAGTGCCCAAGAAGGGCCATTCTTCAGAGGAGGAAC
TGGACGACAGTGATGAGCACGTGGAAGATCGCGATCGTGTGGACACCTTA
CGCACTCCGCTCTGCGAGTTCACAGGCCCCGGCGGTCATCTTTCAGTCGT
GGTGGCCGCCGATTGGCTCTCTTCGATGGATCAAATCATCACGGGCAGCT
GGGATCGGACTGCCATCCTGTGGGACGTGAGACTGGCCTGCCACTGCAGC
CGCTCACTGGCACGACCACGAGCTCACCCACGTGTCGCCCATCCCACCCA
GCGCTGTGTCACGCTTCAGGGACACTACGTTTCGTCTATGGGACTTCGAA
AGCATCCAGCGGTCTCGTCTCAGGCACACGAAACCGTACGTTCAAGTGTC
CACGCACAAAAGGTGGGTTCCGATCAGATCGTACAATCAGTCTGGACCTG
CCAAATGCATCCGCCCTTGCACACAATTCCAACG
FMO02465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12333-RA | 2167 | CG12333-RA | 249..1458 | 8..1184 | 5005 | 95.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18401631..18402193 | 725..163 | 2815 | 100 | Minus |
| 3R | 32079331 | 3R | 18401244..18401574 | 1047..725 | 1240 | 95.2 | Minus |
| 3R | 32079331 | 3R | 18402314..18402468 | 162..8 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:26 has no hits.
FMO02465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:36 Download gff for
FMO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12333-RA | 246..1293 | 8..1047 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:10 Download gff for
FMO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12333-RA | 249..1296 | 8..1047 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:01 Download gff for
FMO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12333-RA | 249..1296 | 8..1047 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:01 Download gff for
FMO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18401244..18401574 | 725..1047 | 96 | <- | Minus |
| 3R | 18401632..18402193 | 163..724 | 100 | <- | Minus |
| 3R | 18402314..18402468 | 8..162 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:10 Download gff for
FMO02465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14226966..14227296 | 725..1047 | 96 | <- | Minus |
| arm_3R | 14227354..14227915 | 163..724 | 100 | <- | Minus |
| arm_3R | 14228036..14228190 | 8..162 | 100 | | Minus |
