FMO02466.5prime Sequence
1198 bp (1004 high quality bases) assembled on 2008-05-23
> FMO02466.5prime
CAGTCGACATGATGGCGCAAAGTGATTCTGGAAATTGCTGTGCCAAGCTT
AATAAAGATGAGTGCTGCCAGAAGACAAAGGATGTGATCTTGAGCGGCGT
ATCTCCCAAAATGTTTCCCGACAAAATCTACAAGTCTGTTCAACCCAAAG
GAGAGGATGCCACCGGAATGACCTGCGAATGCGGTGTTTTTGCAGCCATC
GCTTGCGGGGATTACCCAACACAACTGGACATAGCACAGATGATCTGCCT
CGGTCTGGTGGCTCTGCAGCATCGTGGCCAGGAGTCGGCGGGAATAGTGA
CCAGTTTGGGCAAGTCCTCCAAGAATTTCAGCGTACACAAGGGCATGGGC
ATGATCAACAATCTGTTCAATGACGAGGCGATCAGGAAGTTAAAGGGTAA
CCTGGGAATAGGACACACCCGGTATTCCACGGCCGCAGCCTCGGAAGTTG
TGAACTGCCAGCCGTTTGTGGTGCACACTGCCCATGGAGCACTGGCCATT
GCCCACAATGGTGAGCTAGTGAACTGCGAGTCCCTGAGGAGGGAGGTCCT
GGAGCGAGGAGTGGGCCTGTCTACGCACAGTGACAGTGAACTTATTGCCC
AATCCCTGTGCTGTGCACCAGAGGATGTGTCGGAGCACGATGGACCCAAT
TGGCCGGCCAGAATTCGCCATTTCATGACCCTGGCTCCACTCTCCTACTC
CCTGGTCGTGATGCACAAGATAAGATCTACGCTGTCCGCGATTCCTATGG
CAATAGACCGCTGTGCTTGGGAAAAATCGTGCCCGTTGATGCAGACATGC
GAATATCAATGACCAACTGGGCCGAGGGTTGGGTGGTCAGTAGTGAAAGC
TGCGGATTCTCTCCATCGGAGCCAGATATGTTCGCGAGGTGGAGCCCGGG
TGAGATCATCGAGCTGTCACGAAATGGTTATAGACCGTGATATCGTGAAA
GACCGGACTATAAGCGCATGCATTCTGCATCTTTGAGTACGTCTACTTTG
CCCGCATGATTCCATGTCGAGGATCAGATGGTTTACTCAGCCGCCTGCAT
GTGATCGCAGTGACCAGATCGCAATTAAATGCGATTTGTTAGCTCGATCC
GATTCGTCACGCACCTCCACTGTTATGCAGGACCGGACTGCCATCGGGAA
ATTCTCTGGCAGAATCGCTTAAGTTGGAGCGCACACGCTTTCATCTAA
FMO02466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prat2-RB | 1932 | CG10078-RB | 188..1291 | 9..1096 | 4960 | 97.6 | Plus |
| Prat2-RA | 1737 | CG10078-RA | 209..1096 | 225..1096 | 3880 | 97.1 | Plus |
| Prat-RB | 2105 | CG2867-RB | 249..1083 | 176..1005 | 1075 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6912703..6913527 | 1042..225 | 3570 | 98.5 | Minus |
| 3R | 32079331 | 3R | 7910845..7911454 | 784..176 | 885 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6914414..6914582 | 224..56 | 845 | 100 | Minus |
| 3L | 28110227 | 3L | 6914641..6914689 | 57..9 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:49 has no hits.
FMO02466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:38 Download gff for
FMO02466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10078-RB | 163..1232 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:09 Download gff for
FMO02466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 181..1250 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:32 Download gff for
FMO02466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prat2-RB | 181..1250 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:32 Download gff for
FMO02466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6912681..6913527 | 225..1061 | 98 | <- | Minus |
| 3L | 6914414..6914580 | 58..224 | 100 | <- | Minus |
| 3L | 6914641..6914694 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:09 Download gff for
FMO02466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6905781..6906627 | 225..1061 | 98 | <- | Minus |
| arm_3L | 6907514..6907680 | 58..224 | 100 | <- | Minus |
| arm_3L | 6907741..6907794 | 1..57 | 92 | | Minus |
