FMO02469.5prime Sequence
1205 bp (1030 high quality bases) assembled on 2008-05-23
> FMO02469.5prime
CAGTCGACATGCTCCTCTGGTTGCCCATTGCGGTGGCACGCAGGATGTTC
ATCATCCTCGTCCTAATGGTAATTGGAGGCCTCTTCTACATCTACACTTC
GGAAAATAAATACCACTCATGCTTTATGGAGGGCCAAGTACTGGCAACTC
AGCAGGCGCTAACTGCAGATGGCGAAACAAATCTATTGGGCGACGTCCTC
CAGGCGGATCCCAAACCCTCGCCCGGAAACAGTATCTTCTTTCACGAGAC
CAGCTGCCGCCTATCCGAGAACAGACAGCTGGAGACGCTGAAGGTCACTG
CCCGCCAGGCATGCGCAATCGAGTCGGCAGCGATGCATAATCCGAATTTC
CAAGTGTTCGTCCTGTTCGCTGGCCCCACCTATCGAATCTCCAACAACAA
AAGCCATCCCCAACCATTGTTGGAGGCCATTCTCAGTTACAGCAATGTCC
ATCTACGTCGACTGAATCTCGAGAGTTACGCATCTGGCACGCCCATGGAG
GAGTGGCTCAAAGATGGTCGTTTGTCGCGGTCAAAATATTTGTTCTCGCA
CATATCAGACTTTCTCCGCTACCTTACCCTCTATCGGTATGGCGGTCTTT
ATCTGGACATGGATGTGGTGGTGCTTCGCAACATGGAGAAGGTGCCGCCC
AATTACACAGGTGCTGAGTCCAACACCCATTTGGCAGCTGGCGTAATGAA
CCTGGCAGCCACTGGCTTTGGCCACGAGATCGCCGCGTCCTGTTTGCGCG
ACTTTCAGCACAACTTTAACGGCGGGGACTGGGGCAACAATGGCCCAGGG
GTGATAACCCGTGTGGCTCAGAAGATATGTGGCACCAAAGACATTGCTCT
GATGCGAGAGGACCCCAAGCGCTGCATGGGCTTCAAAGTATTCGGACGGG
GCGCCTTTTACGCCGTACCGTGAAGCAGTGCGAGACTTCTTTGAGCCGGA
AAACTTAGAGAGACAATCGCCCGGTGCAGGACTCGTATGTAGTGCATGTG
TGAATAAGCACTCGAGCAAGCTGCTATCAAATAGATCTAGAACGCCTACG
CCTGTATGCCGAACAAAATTGCCCGAGATCGTACAGGCTGCTGCATACTT
TCGCAAGCTTTCTAGACAATCGTTGGGCGGCGGGGGTAGGTATGCTAATC
AAACTATCTAATCTGAATTCCCACCAGCCTAGGAGATCCTCGGTCGTGTA
GCACA
FMO02469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alpha4GT1-RA | 1714 | CG17223-RA | 127..1223 | 8..1093 | 5210 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3022423..3022950 | 535..8 | 2640 | 100 | Minus |
| 2L | 23513712 | 2L | 3021809..3022368 | 1085..536 | 2305 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:35 has no hits.
FMO02469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:41 Download gff for
FMO02469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17223-RA | 130..1240 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:55 Download gff for
FMO02469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 123..1233 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:15 Download gff for
FMO02469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alpha4GT1-RA | 123..1233 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:15 Download gff for
FMO02469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3021790..3022368 | 536..1100 | 97 | <- | Minus |
| 2L | 3022423..3022954 | 1..535 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:55 Download gff for
FMO02469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3021790..3022368 | 536..1100 | 97 | <- | Minus |
| arm_2L | 3022423..3022954 | 1..535 | 99 | | Minus |
