FMO02471.5prime Sequence
1218 bp (1047 high quality bases) assembled on 2008-05-23
> FMO02471.5prime
CAGTCGACATGAGATTCCAACAGCTCCTGCATGTGCGCAGATTGGCCAGC
GCCGGGGCCACCACCTTGATGAGGCGGCCTATCACCACCACCACCATCAC
CACCACCAGTCGCACCGCCCTGGCAGCCACCTACCCCGCTTTCGCAACCA
CTGTGCGCACAATGGCGGGCAGCGGGGCTCCGATCCCGGAGCTCACAGAG
ATCACCGACAACGTGCAGCGCGGCAACTACGCCACTCTGACCGACAAGGA
TGTGGCGCATTTCGAGCAGCTCCTGGGCAAGAACTTCGTGCTCACTGAGG
ACCTGGAGGGATACAACATCTGCTTCCTTAAGAGGATTCGAGGCAACAGC
AAGTTGGTGCTTAAGCCCGGAAGCACGGCGGAGGTGGCCGCCATCCTGAA
GTACTGCAACGAGCGTCGTTTGGCGGTGGTGCCGCAGGGCGGGAACACAG
GTCTAGTGGGCGGATCCGTGCCGATCTGCGACGAGATTGTCCTTTCTCTA
GCGCGCCTGAACAAGGTGTTATCCGTGGACGAGGTCACCGGCATTGCTGT
CGTGGAGGCGGGCTGCATCCTGGAGAACTTCGATCAGAGGGCCAGAGAGG
TGGGCTTGACGGTGCCACTGGACCTGGGCGCCAAGGCCAGTTGCCACATC
GGGGGCAATGTGTCCACAAACGCGGGCGGAGTGCGGGTGGTGCGTTACGG
CAATCTGCACGGCTCTGTTTTGGGCGTGGAGGCGGTGCTGGCCACCGGTC
AGGTGCTGGACCTTATGTCCAACTTCAAGAAGGACAACACCGGCTACCAC
ATGAAGCACTTGTTCATAGGATCCGAGGGCACTCTGGGCGTGTCACGAAG
CTTTCGATGCTCTGCCCCCATTCCTCGCGAGCGGTGAACGTGGCCTTCAT
CGGCTGAACTCCTTCGACGATGTGCTGAGACTTTTGTCAGTGCCAAGCGT
AATCTGGGCGAGATTCTAAGCTCTGCGAGCTGATTGACGAGCGGACCTTG
ACACCGCCCTCGAGCAGTTCAAGTTCCTGACTCCCCATTTCGGGATTTCC
CTTCTACATGCTCATCGAGACCTCGGGCAGCACGTGACTCGAACGAGAGA
AAAATCCATCAGTTCATTGGGACGTATGACGGTGCGAAATACGGATGACG
TACGGTAATCGGCAAGGTGCAGAGAAAATCCTGGAATTCGTAATTGGTGC
CCTGAGACCGTGATATCG
FMO02471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3835-RA | 1987 | CG3835-RA | 309..1430 | 9..1121 | 5220 | 98.4 | Plus |
| CG3835-RC | 1966 | CG3835-RC | 288..1409 | 9..1121 | 5220 | 98.4 | Plus |
| CG3835-RB | 1862 | CG3835-RB | 184..1305 | 9..1121 | 5220 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2143525..2144219 | 341..1030 | 3210 | 99.1 | Plus |
| X | 23542271 | X | 2143057..2143248 | 9..200 | 960 | 100 | Plus |
| X | 23542271 | X | 2143309..2143453 | 199..343 | 725 | 100 | Plus |
| X | 23542271 | X | 2144290..2144339 | 1033..1082 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:21:01 has no hits.
FMO02471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:28 Download gff for
FMO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3835-RC | 181..1269 | 1..1082 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:15 Download gff for
FMO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3835-RB | 176..1264 | 1..1082 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:40 Download gff for
FMO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3835-RB | 176..1264 | 1..1082 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:40 Download gff for
FMO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2143049..2143248 | 1..200 | 98 | -> | Plus |
| X | 2143311..2143452 | 201..342 | 100 | -> | Plus |
| X | 2143527..2144220 | 343..1030 | 98 | -> | Plus |
| X | 2144287..2144339 | 1031..1082 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:15 Download gff for
FMO02471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2037082..2037281 | 1..200 | 98 | -> | Plus |
| arm_X | 2037344..2037485 | 201..342 | 100 | -> | Plus |
| arm_X | 2037560..2038253 | 343..1030 | 98 | -> | Plus |
| arm_X | 2038320..2038372 | 1031..1082 | 98 | == | Plus |
