FMO02472.5prime Sequence
1171 bp (965 high quality bases) assembled on 2008-05-23
> FMO02472.5prime
CAGTCGACATGGTATTAATTGCTGCGGCTGTCTGCACGAAGAATGGCAAA
GTGATTCTGTCACGTCAGTTCGTCGAGATGACGAAGGCACGCATCGAGGG
ACTGCTGGCTGCCTTTCCCAAGCTGATGACTGCTGGCAAGCAGCACACTT
ACGTGGAGACGGACTCCGTGCGCTACGTCTACCAGCCGATGGAGAAACTA
TATATGCTGCTCATCACCACTAAGGCCAGCAACATTCTGGAGGATCTGGA
GACCCTGCGCCTCTTCTCGAAAGTGATTCCCGAGTACAGCCACTCGCTCG
ACGAGAAGGAGATTGTGGAGAATGCCTTCAATCTGATCTTCGCATTTGAC
GAGATCGTGGCACTCGGCTACAGGGAGAGCGTCAACTTGGCCCAGATCAA
GACCTTCGTGGAGATGGACTCACATGAGGAGAAGGTCTACCAGGCAGTGC
GTCAGACGCAGGAGCGTGATGCGCGCCAGAAGATGCGCGAGAAGGCCAAG
GAACTGCAGCGGCAGCGCATGGAGGCCAGCAAACGGGGTGGTCCCTCCCT
GGGTGGCATTGGCAGCCGCAGCGGCGGCTTTAGCGCCGACGGAATTGGCA
GTAGCGGCGTGAGCAGCAGTTCCGGTGCCTCCAGCGCCAACACCGGCATC
ACCTCCATCGATGTGGACACCAAAATCCAAGGCGGCTGCCAGTAAACCAG
CTTCCCGCAATGCCCTCAAGCTAGGTGGCAAGTCCAAGGACGTCGATAGT
TTCGTGGATCAGCTGAAGAACGAGGGCGAGAAGATTGCCAATCTGGCACC
GGCGGCGCCCGCTGGAGGTTCCAGTGCTGCAGCTAGCGCCAGTGCAGCGG
CCAAGGCAGCTATCGCGTCCGGACAATTCACAAAGAGAGCGTACATTCTG
AGATTGAGGACAAGCTAGTAGTGCGTCTGGGACGCGCGATGGTGGCGTGC
AGCAGTTCGAGAACCTCGGGCCTCTGACGTTGCGCATACGGACGAGCCTA
CGGGACGCATTTTGCTGAGCTGTCTCCCAACCACACACAGGCCTGCAGTG
CCGAACCACCCAACGTGGACCAGGACCTGTCAGTCCGGCACATACATCGG
AACTAAGACCTGGCAAGCCGTTTCCTTTAACACCGAATGTGGGTGTGCTC
AGGTGGCGCTTCTTCCTCGCC
FMO02472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| deltaCOP-RA | 2170 | CG14813-RA | 194..1351 | 9..1162 | 5080 | 97 | Plus |
| deltaCOP-RB | 2167 | CG14813-RB | 194..1348 | 9..1162 | 5025 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1860686..1861099 | 689..275 | 2025 | 99.8 | Minus |
| X | 23542271 | X | 1861156..1861381 | 275..50 | 1130 | 100 | Minus |
| X | 23542271 | X | 1860445..1860624 | 869..690 | 900 | 100 | Minus |
| X | 23542271 | X | 1860091..1860372 | 1162..888 | 415 | 84.6 | Minus |
| X | 23542271 | X | 1861446..1861486 | 51..11 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:41 has no hits.
FMO02472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:29 Download gff for
FMO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14813-RA | 189..1360 | 1..1171 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:04 Download gff for
FMO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 189..1360 | 1..1171 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:26 Download gff for
FMO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| deltaCOP-RA | 187..1358 | 1..1171 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:26 Download gff for
FMO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1860427..1860624 | 690..889 | 99 | <- | Minus |
| X | 1860686..1861098 | 276..689 | 99 | <- | Minus |
| X | 1861156..1861379 | 52..275 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:04 Download gff for
FMO02472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1754460..1754657 | 690..889 | 99 | <- | Minus |
| arm_X | 1754719..1755131 | 276..689 | 99 | <- | Minus |
| arm_X | 1755189..1755412 | 52..275 | 100 | <- | Minus |
