FMO02473.5prime Sequence
1149 bp (1006 high quality bases) assembled on 2008-05-23
> FMO02473.5prime
CAGTCGACATGCTGCGAGAGCGTCACGACATCGAGCGCCACACCAGGTGG
TACGACATCAAAAAGAAGTTTGAGTCGGATCCACGCTACCGTATGGTGGA
CTCCATGTACCGGGAGGAGTACTTCGAGGATTACCTGCACATTATGAAGG
AGGAGAAGCGAAAGGAGCGGGAGATGCGTGAGCAACGGGAACGGGAGCGA
CATCGCGAACTTAAATCTGATCGGAAGGAGAAGGACAAGGAAAAGGACAA
GGGTCGGAAGGATCGAGGACGCAGCCGTTCGAAAGACAAGGACCGCGAGC
ACAAGTCATCCAAAGAAAAGGATAAAGACAAGGAGGAAAAAAGCAAGTCG
GAGAAAAGCAAGAAACGAGATACCACCCCAGAGGAGGGTGAACATCGTGA
AGAGTCAGAAAGGGAAGAACGAGCCGGCAGCGACGACAGCGAGGTGGCTC
GCCAACGGGAGAACGAGGCTGAGCAAAAGCAGAAGGAACGCGAGAAGAAG
CTAAGGGTAGAGCAGAGTATAAGGGAACGAGAGAAGGAGGTGCAGCGAAC
CCTGGCCGGTCATTTGAGGGATCGGGACAAGGAGCGCGAGCATCACATGC
GCGAGGAGTGCATTGGTCACTTTACCGCTTTGCTGACAGATCTGGTGCGA
ACGCCGGACTTCACGTGGAAGGAGGTCAAGCGACAATTGCGGAAGGATCA
TCGCTGGGAACTAATAGAAAGCCTTGATCGCGAGGATCGCGAGCGAAAAT
TCAACGAGCACATTGACAATCTGATGAAGAAGAAGAGGGAGCGATTCCGC
GAAATGCTCGACGAGATTAGCACTCTTCAGCTTACTAGCACTTGGAAAAG
AGATTAAGAAGCTGATCAAAGAAGATCCGCGATACCTAAATACAATTCGG
ACCAGGGCGAGCGCGAGTTCCGGGACTACATCAAGATAAACGATGACAGC
GAGACTTCTCTTCGGGACTCCTGCAGAGTGCAATTTATTACTCACAAGAG
CAGCGATCTCATCAAGGAAATCCAAACATCCTCAGGAGAATTCAGGAACT
TTTGAGACGACAGCGCTATTGGGTGCTCCGATCACATGGAGGAGGAAAGG
AACCCTTTGGGCTCGGCTTTTGGGAGGAACTTAACAACGCGGACGGGCC
FMO02473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:13:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42724-RK | 3589 | CG42724-RK | 2283..3427 | 9..1142 | 5105 | 97.4 | Plus |
| CG42724-RI | 4036 | CG42724-RI | 2730..3874 | 9..1142 | 5105 | 97.4 | Plus |
| CG42724-RC | 3688 | CG42724-RC | 2382..3526 | 9..1142 | 5105 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:13:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6362837..6363209 | 381..9 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 6362399..6362763 | 745..381 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 6362054..6362335 | 1020..745 | 1000 | 96.8 | Minus |
| 3R | 32079331 | 3R | 4486966..4487126 | 6..166 | 310 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:13:48 has no hits.
FMO02473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:45 Download gff for
FMO02473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31367-RA | 913..1936 | 1..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:27 Download gff for
FMO02473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RH | 384..1407 | 1..1020 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:25 Download gff for
FMO02473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42724-RC | 2376..3399 | 1..1020 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:25 Download gff for
FMO02473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6362054..6362334 | 746..1020 | 96 | <- | Minus |
| 3R | 6362399..6362763 | 381..745 | 100 | <- | Minus |
| 3R | 6362838..6363215 | 1..380 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:27 Download gff for
FMO02473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2187776..2188056 | 746..1020 | 96 | <- | Minus |
| arm_3R | 2188121..2188485 | 381..745 | 100 | <- | Minus |
| arm_3R | 2188560..2188937 | 1..380 | 98 | | Minus |
