FMO02475.5prime Sequence
1023 bp (1023 high quality bases) assembled on 2008-05-23
> FMO02475.5prime
CAGTCGACATGACGAGTGCAAGTCTATTGTCGCGTTCCCTGCTAACAGAA
GCTCCGCGTTCTAAGAATCGCTCGGTGTTTACCTTGATTGCTGGTTTGGT
GGTCGGCTACTGCCTGGCTCAAATCTTCTCCAGCATTGCGCCGCACGAGA
GTCTCTATCCGTATCTCAGCAGACGGTTCAGCGATTCCCAGGTGGCCACC
GGTGGTCAATTGGCTCCGGAGCAGAGCGGGTTGAAGCATGATCATCGCAA
CGACAACGTCAGCGTGGCCGAGCAGTTGAAGAAGGAGGTACGCATCCTCT
GCTGGGTGATGACCAATCCCACAAACCACAAGAAGAAGGCTCGCCATGTG
AAGCGAACCTGGGGCAAGCGCTGCAACATCTTGCTCTTCATGAGTTCCGG
CGCGGATGAGGAGCTGCCCACCGTGAAGCTCGACGTGGGCGAGGGACGGG
AGAATCTATGGGCCAAGGTCAAGGAGGCGTTCAAGTACGTCTATCATCAC
CACTATAACGACGCCGACTTCTTCTACAAGGCCGATGACGACACTTACGC
CGTGATCGAGAACATGCGGTATATGCTCTATCCGTACAATCCCGAAACAC
CCGTGCACTTCGGATTCAAGTTCAAGCCCTTCGTGAAGCAGGGCTACATG
TCCGGCGGAGCGGGCTACATACTCAGTCGGGAGGCCCTGCGTCGCTTCGT
GGTCGAGGGCATTCCGAATCCCAAGATGTGCCTGCCGGGCACGGTGGTCA
ACGAGGACATCGAAATCGGGCGATGCATGGAGAACCTGAACGTCACCGCC
GGCGATTCCAGGGACGAAATCGGTCGCGGTCGCATGTTTCCCTTCATACC
GGAGCATCACTTGATCCCAGCCAAGGCGGATAAAAACTTTTGGGTACTGG
AACTACCTTTACTACAGACGGATGACGTAAGGTTTCGCCGCAAGCTTTCT
AGACCATTCGTTTGGCGGCGCGGGGCCAGGTAAGTGTCATAATCATAATC
ATATCATAATCATATCACACTAG
FMO02475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8708-RD | 1862 | CG8708-RD | 349..1267 | 9..927 | 4550 | 99.8 | Plus |
| CG8708-RB | 1674 | CG8708-RB | 161..1079 | 9..927 | 4550 | 99.8 | Plus |
| CG8708-RC | 1626 | CG8708-RC | 155..1031 | 51..927 | 4340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8160050..8160931 | 931..50 | 4315 | 99.8 | Minus |
| 2L | 23513712 | 2L | 8944428..8944862 | 731..297 | 705 | 77.5 | Minus |
| 2R | 25286936 | 2R | 8161033..8161075 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:00:17 has no hits.
FMO02475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:49 Download gff for
FMO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RA | 147..1085 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:47 Download gff for
FMO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 152..1079 | 1..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:29 Download gff for
FMO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8708-RB | 152..1079 | 1..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:29 Download gff for
FMO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8160050..8160929 | 52..931 | 99 | <- | Minus |
| 2R | 8161033..8161079 | 1..51 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:47 Download gff for
FMO02475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4047555..4048434 | 52..931 | 99 | <- | Minus |
| arm_2R | 4048538..4048584 | 1..51 | 92 | | Minus |
