FMO02476.5prime Sequence
1164 bp (1013 high quality bases) assembled on 2008-05-23
> FMO02476.5prime
CAGTCGACATGGCCTCCGGGGGCACTACGGCACCATCGCTGAGTGCCAGT
CCCATAGTCTTCGCCCGGAATCTGTTCCGGGCCCTGAACGATGAAGTTCC
GCCCGTGAATATGATGGTATCTCCGGCTGGTGCCCGCAGTGCCATGACCT
TGGTGTTTATGGGGGCCGGCGGGAAGAGTGCAGATGAACTGCGCTCCAAA
TTGATATTGGGTGTATCAAATAAATCGGAAGTGGCCAAACAACATGCGGA
ATCCTGGACCGATGAGTGCTCCTGTGCAAAAAAAGGAGTTGCGCTGCGAT
TGGTCACACGATTGTACGTCAATGAAGAGGAGAAAATCCGGACTGACTTT
AATGACATGGCCTTGGAGTTCTTCAATGCTGAGGCTTATTCTCTTAACTA
CTTGAACCCGGAAGATTCTGTCAAAAAAGTTAACAAGTGGCTAGAAAAAC
ACACGTTTTACACTGTACGAAATCTGTTTACGCCCGAGGTTTTCAATTCC
GATTCCAGTGTAATCCTTGTAAACTCACTGTTCTTCCGAGCCAAATGGAA
CAAGATATTCCCCCAGCAACTTACCCAGATCGATGACTTCTGGATAAATC
CTCGGCAGCGAATGGAAGTTTCAATGATGAGGCAAATTGGTCAGTTCCGC
TATGGGGAGTCCAAGAAACTAAAGTCACAGATCCTGCAATTGCCGTTTGA
AAGATCCAATTTGACCATGATGATTATCTTACCAACTGCTATTGATGGCT
TGCCCGAATTGGAGGAAAAACTTGGTCAACTGGACATGAACGAGGTAGCC
GCCAAAAGTCTAATGAAAGGAAGTGGATGTAACCATTCCAAAATTCACGA
TCGAGTGCACTGTTGATCTTAAGGTTCCACTACAAAAGATGGGTATTAAT
AGTGTTTTGATGCTGGACAGCGATTTGAGCGATCTTTTCGAATGAAAACA
CACAAAGATTCGGAGCTAGACACAAAGTGTTTTTAAATGTACTGATTTGG
GTGCGAGTAGCACCAGAGCAGAGTCCACCCGAGTCTTAAGAAGATCCGAT
CGCAGTCTCAAGCGACCGCCCTTTGTTTTGCATACCGAAAGAAACGTTAC
TTCGTTGGCCATCGTAGCGTAGCTTCATGAACATCCTGGCCCCGGCCCAG
GTAGGTGCCATACT
FMO02476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spn47C-RC | 3114 | CG7722-RC | 77..1210 | 9..1112 | 4875 | 97 | Plus |
| Spn47C-RB | 1351 | CG7722-RB | 77..1210 | 9..1112 | 4875 | 97 | Plus |
| Spn47C-RA | 1356 | CG7722-RA | 82..1215 | 9..1112 | 4875 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10940710..10941588 | 888..9 | 4335 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:54 has no hits.
FMO02476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:50 Download gff for
FMO02476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7722-RA | 79..1141 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:06 Download gff for
FMO02476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn47C-RA | 79..1141 | 9..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:46 Download gff for
FMO02476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spn47C-RA | 82..1144 | 9..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:46 Download gff for
FMO02476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10940512..10940651 | 889..1017 | 92 | <- | Minus |
| 2R | 10940710..10941588 | 9..888 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:06 Download gff for
FMO02476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6828017..6828156 | 889..1017 | 92 | <- | Minus |
| arm_2R | 6828215..6829093 | 9..888 | 99 | | Minus |
