FMO02479.5prime Sequence
1207 bp (1049 high quality bases) assembled on 2008-05-23
> FMO02479.5prime
ATTATACGAAGTTATCAGTCGACATGGTTCTGATTACTTTGACCCTGGTT
TCGTTGGTGGTGGGCCTGCTGTATGCCGTGCTGGTATGGAACTATGACTA
TTGGAGGAAACGGGGCGTTCCTGGTCCCAAGCCAAAGCTATTGTGCGGAA
ACTATCCAAACATGTTTACTATGAAGCGGCATGCAATCTACGATCTAGAC
GATATATACAGGCAGTATAAGAACAAGTACGATGCTGTGGGCATTTTTGG
CAGCCGCTCTCCACAGCTGCTGGTGATCAATCCCGCGTTGGCGCGTCGAG
TCTTTGTGTCCAACTTTAAGAACTTCCACGACAATGAGATCGCCAAGAAT
ATTGACGAGAAAACCGATTTCATTTTCGCCAACAATCCGTTCTCGTTAAC
TGGCGAAAAGTGGAAAACTCGAAGGGCGGACGTAACGCCTGGTCTTACGA
TGGGACGGATAAAGACAGTCTATCCGGTGACAAACAAGGTGTGCCAAAAG
TTGACCGAGTGGGTGGAGAAGCAATTGCGTCTGGGTTCTAAAGACGGCAT
CGATGCCAAGCACATGAGTCTCTGCTTCACAACAGAGATGGTCACCGATT
GTGTTTTGGGTCTGGGCGCTGAAAGCTTTTCGGATAAGCCCACACCCATA
ATGTCGAAAATCAATGATCTCTTCAACCAGCCCTGGACCTTTGTACTGTT
CTTTATACTGACTAGTTCCTTCCCATCGCTAAGTCATTTGATTAAGCTAC
GCTTCGTGCCAGTGGATGTGGAACGCTTCTTTGTCGACCTGATGGGCAGT
GCGGTAGAGACACGTCGTGCCCAGTTGGCGGCGGGAAAGCAGTTCGAGCG
GTCCGACTTCCTGGACTACATCTTGCAACTGGGTGAGAAGCGCAACCTGA
CAATCGTCAATTGCTGGGCCTATTCCATGACCTTCCTGCTCGACGGATTC
GAACGACGCAACAGTCTTGCTCACATACTGCTCAATCTGGGTCGTAATAA
GGAGGCACAGAATCTTCTGCGGAAGGAGATCGTTCCCATCTGCAGATGGC
ACCATTGCATTGAAAGCTACGATTTGCCCTACCTGACGCCTGGGTGCAGA
AACAATCCGATCTTCCCGCCCGAATTATGTCGAATACCTGTGACCGATCA
TCGGAATCCACGGAGGTCCCACCTCTGCCTGTGAAAAGGTCACACTGTGT
GGTTGTT
FMO02479.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp28a5-RA | 1766 | CG8864-RA | 59..1184 | 24..1136 | 5125 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13978195..13978694 | 564..1058 | 2095 | 97.8 | Plus |
| 2L | 23513712 | 2L | 13977685..13977938 | 205..458 | 1255 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13977360..13977548 | 24..212 | 945 | 100 | Plus |
| 2L | 23513712 | 2L | 13978002..13978107 | 458..563 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:43 has no hits.
FMO02479.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:52 Download gff for
FMO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8864-RA | 52..1204 | 19..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:55 Download gff for
FMO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 53..1205 | 19..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:49 Download gff for
FMO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp28a5-RA | 53..1205 | 19..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:49 Download gff for
FMO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13977354..13977547 | 19..211 | 98 | -> | Plus |
| 2L | 13977692..13977938 | 212..458 | 100 | -> | Plus |
| 2L | 13978003..13978107 | 459..563 | 100 | -> | Plus |
| 2L | 13978195..13978741 | 564..1099 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:55 Download gff for
FMO02479.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13978003..13978107 | 459..563 | 100 | -> | Plus |
| arm_2L | 13977354..13977547 | 19..211 | 98 | -> | Plus |
| arm_2L | 13977692..13977938 | 212..458 | 100 | -> | Plus |
| arm_2L | 13978195..13978741 | 564..1099 | 96 | -> | Plus |
