FMO02483.5prime Sequence
1228 bp (1040 high quality bases) assembled on 2008-05-23
> FMO02483.5prime
CAGTCGACATGTCGGGAGTCGCCATAGCCATCAATGCGGCCATTTCGGGC
GCCGCCTACTGCATGACAGTCCGGATGATACCCCGCTTCCGCGAGATGTT
CATCAAGGCCAATCTCTTTGGCAACGATCTGTGCAAGAAGGACAAGCCGC
AGGTACCTGAATCCTTTGGTGTGCTTATTGGCTGTGTGTTCCTGGTGTCC
TTGTTTCTGTTCATACCGATTCCCTTCGCCTTCGACGAGGCAGCTGCCAC
GGATGCGATTACTGGAGGCAAACCAGATACCTTTCCACATGATAAGTTCG
TGGAATTGATTGCCGCCCTTCTTTCCATTTGCTGCATGATCTTCTTGGGC
TTCGCCGATGACGTTCTCGACCTGCGATGGCGCCACAAGCTCCTGTTGCC
CACCATCGCCACGTTGCCGCTGCTAATGGTGTACTACGTAAACTATAACT
CCACGACGGTCATTATGCCCAACTTTGCAAGGAATCTGATTGGGACCTCC
TTGAATATAGGTGCCTTGTACTACGTCTTCATGGGCATGTTGGCGGTATT
CTGCACAAATGCCATCAACATCCTGGCGGGCATCAATGGCCTGGAGGTGG
GACAATCCTTTATTATTGCAGGCTCCATTCTGGTCTTCAATGCCATTGAA
CTGTTGCTCGGTCACCAGGTGGATTCGCATATATTCTCCATTTACTTCAT
GCTGCCTTTCCTGGCCACCACCCTAGCGCTATGGAAGTTCAACAAATATC
CATCGCAGGTGTTTGTTGGGGACACCTACTGCTACTTTGCCGGCATGACT
TTCGCCGTGGTTGGAATCCTGGGCCACTTCAGCAAGACGCTGCTGCTCTT
CTTCCTGCCGCAGATCCTGAATTTCCTGTACTCCACGCCGCAGCTGTTCC
ACTTTGTGCCATGTCCGCGTCACCGGCTGCCCAAGTACGACAGCAAGACG
GATCTGCTCCACATCAGCCCACGGAGTTTCGCCTGAGGATCCCACGCCCC
GGGTCGCCTGATGTCACAGTACTGCGGAACTTGCGACTATAGCTGGCATA
CAAGCGACGGAGTGTTAAGAACAACACCTTACGCCTCATTACCTTTGTCT
TATCCGTTTCCGGACTTGTTTCACGAGCGAAGTGTCACCCGAATGCGTGA
TAGGAATTCAGGTCTGTGTTACCTGATGGGCTGAACTCATCAATTCACTG
TGGCACCTATCTCTTCTATTGCGAGAAC
FMO02483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5287-RA | 1557 | CG5287-RA | 231..1401 | 8..1169 | 5205 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13182907..13183204 | 746..1039 | 1260 | 98 | Plus |
| 2L | 23513712 | 2L | 13180159..13180395 | 509..745 | 1185 | 100 | Plus |
| 2L | 23513712 | 2L | 13179885..13180102 | 295..512 | 1090 | 100 | Plus |
| 2L | 23513712 | 2L | 13179477..13179623 | 8..154 | 735 | 100 | Plus |
| 2L | 23513712 | 2L | 13179683..13179824 | 155..296 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:17 has no hits.
FMO02483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:44:44 Download gff for
FMO02483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 223..1297 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:10 Download gff for
FMO02483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 221..1295 | 1..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:29 Download gff for
FMO02483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5287-RA | 221..1295 | 1..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:29 Download gff for
FMO02483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13179467..13179623 | 1..154 | 97 | -> | Plus |
| 2L | 13179683..13179824 | 155..296 | 100 | -> | Plus |
| 2L | 13179887..13180100 | 297..510 | 100 | -> | Plus |
| 2L | 13180161..13180395 | 511..745 | 100 | -> | Plus |
| 2L | 13182907..13183204 | 746..1039 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:10 Download gff for
FMO02483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13179467..13179623 | 1..154 | 97 | -> | Plus |
| arm_2L | 13179683..13179824 | 155..296 | 100 | -> | Plus |
| arm_2L | 13179887..13180100 | 297..510 | 100 | -> | Plus |
| arm_2L | 13180161..13180395 | 511..745 | 100 | -> | Plus |
| arm_2L | 13182907..13183204 | 746..1039 | 97 | == | Plus |
