FMO02484.5prime Sequence
1184 bp (1006 high quality bases) assembled on 2008-05-23
> FMO02484.5prime
CAGTCGACATGGTGGTCAATTTCAAGGTGTTCAAGAAGTGTTCCCCGAAC
AACATGATCACGCTCTACATGAACAGGCGTGATTTTGTAGATTCCGTGAC
TCAGGTGGAACCCATTGATGGAATCATTGTGCTGGACGATGAGTACGTGC
GCCAGAACCGCAAGATCTTCGTGCAGTTGGTCTGCAATTTCCGATATGGG
CGCGAGGACGACGAGATGATCGGTCTGCGGTTCCAGAAGGAACTGACCCT
GGTCTCGCAGCAGGTGTGCCCACCCCAGAAGCAGGACATCCAGTTGACCA
AGATGCAGGAGCGTCTGCTGAAGAAGCTTGGCTCCAATGCCTATCCCTTC
GTGATGCAGATGCCACCAAGCTCGCCGGCCTCGGTGGTTCTCCAGCAGAA
GGCCAGTGACGAGAGCCAGCCCTGCGGAGTCCAGTACTTCGTAAAGATCT
TTACCGGAGACAGCGACTGCGATCGATCGCATCGCAGGAGCACCATTAAC
CTGGGCATCCGCAAGGTGCAGTACGCACCGACCAAGCAGGGCATCCAGCC
CTGCACCGTCGTTCGCAAGGACTTCCTTCTGTCGCCCGGAGAGCTCGAAC
TGGAGGTCACCCTCGACAAGCAGCTGTACCATCACGGCGAGAAGATCTCG
GTGAACATCTGCGTGCGCAACAACTCCAACAAGGTGGTGAAGAAGATCAA
GGCCATGGTGCAGCAGGGCGTCGATGTGGTCCTGTTCCAGAACGGTCAGT
TCCGCAACACGATCGCCTTCATGGAGACGAGCGAGGGATGTCCCCTGAAC
TCGGGATCCAGCCTGCAGAAGGTCATGTATCTGGTGCCCACCCTGGGTGG
CCAATTGCGACCGCGCAGGCATCGCCGTTGAGGTGATATCAAGCGCAAAG
ACACAGCTCTGGCCTCGACCACACTTATTGCCAGTCAGGATGCGAGGGAT
GCCTTTGGCATATTGTTTCATATGCTGTGAAGGTCAGCTTTTCTTGGGAG
CCCTGGGCGGCGGCTCTTGCGCTGAGCTACCATTTTATTTCTGATGCACC
CGAGCTAGTCGTAGGTCCAACTGGAAAGCGAGGCTCCATGGAGCCGCAAG
CTTTCTTGAACATTCGTTGAGCGCGGCCCAGTTAATGCCCCTATCGTATC
CTTAATCTTATTCATATCACAACTACCCTTAGGA
FMO02484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arr1-RB | 2327 | CG5711-RB | 120..1208 | 9..1093 | 5060 | 98.3 | Plus |
| Arr1-RA | 1435 | CG5711-RA | 120..1208 | 9..1093 | 5060 | 98.3 | Plus |
| Arr1-RC | 1356 | CG5711-RC | 150..1129 | 118..1093 | 4515 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18078915..18079723 | 117..925 | 3935 | 99.6 | Plus |
| 2L | 23513712 | 2L | 18078388..18078496 | 9..117 | 545 | 100 | Plus |
| 2L | 23513712 | 2L | 18079957..18080084 | 926..1053 | 395 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:32 has no hits.
FMO02484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:05 Download gff for
FMO02484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5711-RA | 113..1177 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:34 Download gff for
FMO02484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..1174 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:25 Download gff for
FMO02484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arr1-RA | 110..1174 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:25 Download gff for
FMO02484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18078378..18078496 | 1..117 | 96 | -> | Plus |
| 2L | 18078916..18079723 | 118..925 | 99 | -> | Plus |
| 2L | 18079957..18080089 | 926..1057 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:34 Download gff for
FMO02484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18078378..18078496 | 1..117 | 96 | -> | Plus |
| arm_2L | 18078916..18079723 | 118..925 | 99 | -> | Plus |
| arm_2L | 18079957..18080089 | 926..1057 | 94 | | Plus |
