FMO02486.5prime Sequence
1194 bp (1048 high quality bases) assembled on 2008-05-23
> FMO02486.5prime
CAGTCGACATGTCATTCCTGCGAAAATCGGTGCACCTATTGGGTTCTGTG
GCGAGGCGCCAACGACACCTGAAAGTGATTGAAGGAGCGATCTCGACAGC
TGCGCGGGACTTCAGCTCAAAGCCATCGGAAGATTACGCCAATTTCCCCG
GTGCCAAGGCTCCATTTGTCAGCAAATTGAACCTCATTCAACCGGAAGAC
TATGCGCCAATACCAATTTACCGGGTGATGGACCAGGATGGCTATATAGC
GGATGAGACCCAGGATCCCCAGCTGGGCCGTGAGGTTGTGGAGAAAATGT
TTCGCGATATGGTGCTGCTGAACACCATGGACAAAATCCTGTACGAATCC
CAGCGACAGGGCAGAATCTCATTCTACATGACCAATTTCGGCGAGGAGGC
TTCACACATTGGCAGTGCCGCCGCCTTGGAGATGCGGGATCTCATCTACG
GGCAGTATCGTGAAGCGGGTGTTCTGGTTTGGCGTGGCTTCCGTATCGAC
CAGTTTATCGATCAGTGCTACGGCAACACGGACGACTTGGGTCGCGGCAA
GCAGATGCCCGTCCACTACGGCTCAAGGGAACTTAACTTTGTCACCATCT
CCAGTCCGCTTTCCACCCAAATGCCCCAGGCCGTTGGTGCCGCCTACGCC
ATGAAATTGAGGCCAAACAACGATGCCTGTGTGGTCTGTTACTTTGGTGA
GGGAGCTGCTTCCGAGGGAGATGCACATGCTGCCTTTAACTTTGCTGCCA
CTTTGGGTTGTCCGGCTATCCTCTTCTGTCGAAACAACGGCTTTGCCATA
TCCACACCATCGCATGAACAGTACAAGGGCGATGGAATCGCCGGTCGCGG
ACCTATGGGCTATGGAATTACTACCATTCGAGTGGATGGCACAGACGTCT
TCGCCGTCTATAATGCGATGAAGCTGCCAGGGAGTATGTCCTCAAGGAGA
ACAAGCCGGTGGTGTCGAGGCCACTGGCCTATTCGAGTGGGTCACCATTC
CACCTCAGATGATAGTACAGCCTACCGACAGCGGAAGGAGATCGAGATTT
GACTCGTGAGCACCCAATATTCCAGCTTAGCGCCTACATGGGTGCAAAGC
TGTGAACGAGACTGTCGAAACGAATATGTCAGACATAAGAAAGGGTTGAA
GACGATCCAAGTGTCCGGAAAAAACCTCAAGCCCCACACTTGCC
FMO02486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8199-RA | 1750 | CG8199-RA | 90..1281 | 8..1184 | 5230 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9556003..9556538 | 77..612 | 2680 | 100 | Plus |
| 3R | 32079331 | 3R | 9556886..9557159 | 778..1051 | 1125 | 95.6 | Plus |
| 3R | 32079331 | 3R | 9556605..9556770 | 613..778 | 830 | 100 | Plus |
| 3R | 32079331 | 3R | 9555874..9555943 | 8..77 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:20 has no hits.
FMO02486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:10 Download gff for
FMO02486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 80..1232 | 8..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:45 Download gff for
FMO02486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 90..1242 | 8..1147 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:37 Download gff for
FMO02486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8199-RA | 90..1242 | 8..1147 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:37 Download gff for
FMO02486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9556605..9556770 | 613..778 | 100 | -> | Plus |
| 3R | 9556887..9557268 | 779..1147 | 92 | | Plus |
| 3R | 9555874..9555943 | 8..77 | 100 | -> | Plus |
| 3R | 9556004..9556538 | 78..612 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:45 Download gff for
FMO02486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5381596..5381665 | 8..77 | 100 | -> | Plus |
| arm_3R | 5381726..5382260 | 78..612 | 100 | -> | Plus |
| arm_3R | 5382327..5382492 | 613..778 | 100 | -> | Plus |
| arm_3R | 5382609..5382990 | 779..1147 | 92 | | Plus |
