FMO02487.5prime Sequence
1070 bp (1029 high quality bases) assembled on 2008-05-23
> FMO02487.5prime
CAGTCGACATGAGATCGAGGCTGTTTTGGATACTGGCGATTATATACTCC
TCACTCCATCACATCGGCTCGGGTTCCACGTCGACCACATTGAAACGACC
GCGAGCTGGCGATCCATTCGACACGTTTCCGAAGAACTTCTGGCAGGAGT
TCTCATCGCCGTTCACCGACACGCCCGAGGATGAGGAGCTGGAGGTCACC
GAGACGACCACCCACGAGCCGTTCCCGTTCTTCGCCGATCCGTACACCAC
GCTGAACATCAGCACCCAGCTCTCGTCCAGCGTTTATCTGCACTGCCGGG
TGAACGATCTGCAGGGCAAGACGGTGTCCTGGATGCGTCGCCGTGGCGAT
GATCTCACCCTGATAACCTTTGGCCAGCACACATATAGCGGCGACTCGCG
GTATTCGCTGGAGTTCGAGGAGCCCAACGATTGGAAGCTGCTCATCCAGT
TCGCCAACGAGCGGGACGAGGGTCCCTACGAGTGCCAGGTGTCCTCGCAT
CCGCCGCTCGTCCTGCTCGTTTACCTTACTATAATTGTTCCTCACGTGGA
GATACTCGACGAGCGGGGCTCGGCCACGCCGGAGAAGTACTACAAGGCTG
GCAGCACCATCGAGCTGCAGTGCGTCATTTCGAAGATTCCGCATCCCTCC
TCCTATATCACCTGGCGGCACGGACCGCGCCTGCTCAACTACGATACTAG
TCGCGGAGGAATCAGTGTCAAGACGGACATGCTGCCAGGACGAGCTCTGA
GTCGCCTGTATATCGCCAATGCCAATCGCCAGGACACGGGCAACTACATC
TGCATGCTGGGCAATGAGATTACGGAGACGGTGGTGGTGCATGTGCTGAA
CGGTGAGGAGCCAGCCGCCATGCAGCATGCGAACGGAAGCCGCCAAAAGG
CCAACGCCTCCACAATGGTTGTGTTATTTCTAGTGTACGTTTGCATCTCC
GGGTTCGATTTCCGTAGCCGGAATGAATCGGGGATTGGCTTGGGACAGTG
TGGGGATGGGGATGGGATTAAGACGAGCAAGCTTTCTAGACCATTCGTTG
GCGCGCGGGTCCAGGTAAGT
FMO02487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr14-RB | 3794 | CG10946-RB | 660..1679 | 9..1026 | 4990 | 99.5 | Plus |
| dpr14-RA | 1668 | CG10946-RA | 477..1496 | 9..1026 | 4990 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7906500..7906946 | 537..91 | 2235 | 100 | Minus |
| X | 23542271 | X | 7906249..7906427 | 715..537 | 895 | 100 | Minus |
| X | 23542271 | X | 7906043..7906184 | 854..713 | 695 | 99.3 | Minus |
| X | 23542271 | X | 7905829..7905995 | 1017..852 | 690 | 98.2 | Minus |
| X | 23542271 | X | 7907257..7907338 | 90..9 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:20:22 has no hits.
FMO02487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:12 Download gff for
FMO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10946-RA | 439..1463 | 1..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:20 Download gff for
FMO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 472..1496 | 1..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:20 Download gff for
FMO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr14-RA | 472..1496 | 1..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:20 Download gff for
FMO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7905819..7905994 | 853..1026 | 97 | <- | Minus |
| X | 7906045..7906181 | 716..852 | 99 | <- | Minus |
| X | 7906249..7906426 | 538..715 | 100 | <- | Minus |
| X | 7906500..7906946 | 91..537 | 100 | <- | Minus |
| X | 7907257..7907343 | 1..90 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:20 Download gff for
FMO02487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7801290..7801376 | 1..90 | 96 | | Minus |
| arm_X | 7799852..7800027 | 853..1026 | 97 | <- | Minus |
| arm_X | 7800078..7800214 | 716..852 | 99 | <- | Minus |
| arm_X | 7800282..7800459 | 538..715 | 100 | <- | Minus |
| arm_X | 7800533..7800979 | 91..537 | 100 | <- | Minus |
