FMO02488.5prime Sequence
1145 bp (926 high quality bases) assembled on 2008-05-23
> FMO02488.5prime
CAGTCGACATGAGCCCCAAGCTGCATGAGTTTGCGGTGGTGCTACTGCGC
GATGGTCAGGCCACGCCCTGGGGCATTCGTTTGGTGGGCGGCAACGATCT
GGACACGCCGCTAATTATCACCAGGGTGCAAGTGGGCAGCCCAGCGCATG
GCGAACTTCTAAGAGGCGACATCATCTCGAAGATCGGCGAGTACGACGCA
CGCGACCTGAGTCATGCGGATGCACAGCAGCTGTTCCGCGGCGCTGGCAA
CGAGATCCGCCTGGTGGTGCACAGGGACAACAAAATCGCCTACACGCAGG
GTGCAACTCAGGAGGCAGGTCCTGGATCTCGGAGCAACTCCACTTTGCCG
CCGGTCACTCCGGATCTGATGCCCCACCGCGGTCCGTCGCCCTTTTTGCC
CGGACCCAGCCACTTTGAGAGGGCCCTCCAGTTGCCGGTGGACACGTTGC
CGCAGACCGTGTTTCCCCAGCTGAACTCATCCGGTGGCTATGAGGTGCCA
TCGACTGTGTTCTCACCCAAGCCAACCAGGGACCATCAACAAGACGTCGA
TGAGGAGCAGGCGGCCATTGTGAATCAGCCCTACCGTACAACTCCGCTGG
TCCTGCCCGGCGCCAAAGTGAAGAAGGATGCGCCCACGACAGAGTCCTAC
TTGAGGCACTACCCCAACCCGGCTGTGCGCGCCCACCCAGGACACGACTA
CCATGACAGTATCATGAAGCAGCGCGTGGCCGACACCATGCTGCACAGGG
TGGTCGGTTCGGAAGCCGACACTGGCCGCGTCTTCCACAAGCAATTCAAC
TCGCCCATTGGCCTGTACTCAACAACAACATCGAGGACACCATCAGATCC
ACAGTTCCCTTCGCAACAAGCGAAAGCAATCGGCTTGAAAGGACAGTCCT
TTGCATCGTCCTTTGCCAACAAACTTACGGCTATTAAGAAACTGTCCGGT
ACGATCCCCAGGACCAGCGAAACCTACTAGCCATTCAGAAGAGGGCGGCT
ACACACCTTGGCCAATCCTCGCCACAGGAAGTGACACGTTCCTGTGCAAA
CTTAAGGTCTATACACCCAATAGATGGTTCAGGGAAAGAAACCCATATCC
GCGCTCGTGATCCCGGCCGCCGATGAAATTGTAGGTAAAAAGAGA
FMO02488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zasp66-RF | 1714 | CG6416-RF | 186..1301 | 9..1122 | 4945 | 97.1 | Plus |
| Zasp66-RM | 1554 | CG6416-RM | 186..1099 | 9..923 | 4475 | 99.5 | Plus |
| Zasp66-RE | 1725 | CG6416-RE | 312..1312 | 124..1122 | 4370 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8627424..8627730 | 272..578 | 1535 | 100 | Plus |
| 3L | 28110227 | 3L | 8634580..8634785 | 576..781 | 1015 | 99.5 | Plus |
| 3L | 28110227 | 3L | 8626960..8627110 | 125..275 | 755 | 100 | Plus |
| 3L | 28110227 | 3L | 8626394..8626512 | 9..127 | 595 | 100 | Plus |
| 3L | 28110227 | 3L | 8635002..8635081 | 780..858 | 350 | 98.8 | Plus |
| 3L | 28110227 | 3L | 8635681..8635743 | 859..923 | 210 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:13 has no hits.
FMO02488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2010-07-30 09:26:13 Download gff for
FMO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6416-RF | 179..1216 | 1..1035 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:56 Download gff for
FMO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RF | 179..1216 | 1..1035 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:27 Download gff for
FMO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zasp66-RF | 179..1216 | 1..1035 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:27 Download gff for
FMO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8634583..8634783 | 579..779 | 99 | -> | Plus |
| 3L | 8635002..8635081 | 780..858 | 98 | -> | Plus |
| 3L | 8635681..8635752 | 859..930 | 93 | -> | Plus |
| 3L | 8626961..8627109 | 126..274 | 100 | -> | Plus |
| 3L | 8627427..8627730 | 275..578 | 100 | -> | Plus |
| 3L | 8626387..8626510 | 1..125 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:56 Download gff for
FMO02488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8619487..8619610 | 1..125 | 96 | -> | Plus |
| arm_3L | 8620061..8620209 | 126..274 | 100 | -> | Plus |
| arm_3L | 8620527..8620830 | 275..578 | 100 | -> | Plus |
| arm_3L | 8627683..8627883 | 579..779 | 99 | -> | Plus |
| arm_3L | 8628102..8628181 | 780..858 | 98 | -> | Plus |
| arm_3L | 8628781..8628852 | 859..930 | 93 | -> | Plus |
