FMO02489.5prime Sequence
1194 bp (1009 high quality bases) assembled on 2008-05-23
> FMO02489.5prime
CAGTCGACATGTCGAAGGAAGACTCAGGCGCATCCAGTGCAGAGGCGAAT
CCAGCTGAATCGGAAATTTCGATGGGTCGAGGACCCCGCCCAAGGTCCTT
TACTGGCGGCGGAGGCGGTGGCGGAACAGGTGGATCAGGTGGAAGTGGTG
GTACCTCCGGCGGCAACAATCTCAAGCCCGAAAGAAGCGCCCGGGAAGAT
GACGCCATCAACCGTCTGACGGACTCGAAGTCGAGTCACCGAAAGCTGCT
CAGCGATCCGCGATTCCAGATTCGGCCGCTGCAGCAGGTAATCTCGGCCT
GCACCGGGGCCATGATCACGGCCTGCTTCATGACGCCCCTGGACGTGATC
AAGACTCGCATGCAGTCGCAGCAGTCGCCGGCCCACAAGTGCTTCTTCTA
TTCGAACGGGCTGATGGACCACCTCTTCGCAAGTGGACCCAATGGCTCCG
AGTTGGCGAGCCTGCGGCAAAGACCACAGTTTTCCAGCTCCTGGGATGCT
CTGATGAAAATCAGCCGGCACGAAGGATTGGCCGCTCTTTGGTCCGGCCT
GGGTCCCACCCTCGTCTCCGCCCTGCCCTCCACCATAATCTATTTCGTGG
CCTATGAACAGTTCAAGGCCAGATACCTCCAGATTTACGAGAGCCACTAT
AATAAGAGTCAGGAGCCCCGGCACCTTGAAATCAGGGATACCAAGAAAAG
TCTACCGTCGGTGGTTCCCATGATGTCCGGGGTGACTGCTCGGATTTGTG
CTGTTACCGTGGTGAGTCCCATCGAGCTGGTGAGAACCAAGATGCAGGCC
CAGCGCCAGACCTACGCCCAGATGCTGCAGTTCGTCCGGAGTGTGGTGGC
CCTTCAAGGCGTGTGGGGCTTGTGGCGGGGCCTGCGTCCCACGATCCTCA
GGGACGTGCCCTTTTCAGGATTTACTGGCCCATCTATGAGAGCCTAAACA
GAATCTCGGCATGGCTCAACAGCCCTCGTTCAGTCTGAGTTCTGCAGCGT
GATGCAAGGACAGTGCGCCATTGTGACCACTCTTCGACGTGGTCAGAACC
ATGACAGAATGAGTTGGGAGAAACGATCATTCTCACGGACTCGCGCCAGG
AATTGAAGAGTCCACCCTTCGAGACTACGGGAATTAAGAACACGGCGGTC
GGGAACTCTCTCCGAGAGAGTGCGGAACGAGGGCGCTTCTGCTC
FMO02489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2616-RB | 1820 | CG2616-RB | 125..1229 | 3..1094 | 5020 | 97.6 | Plus |
| CG2616-RA | 1525 | CG2616-RA | 125..1229 | 3..1094 | 5020 | 97.6 | Plus |
| Shawn-RE | 3255 | CG14209-RE | 1998..2161 | 269..426 | 220 | 76.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7722541..7723224 | 3..686 | 3405 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7723701..7724010 | 684..991 | 1340 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:19:55 has no hits.
FMO02489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:15 Download gff for
FMO02489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..1241 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:40 Download gff for
FMO02489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..1241 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:09 Download gff for
FMO02489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2616-RA | 123..1241 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:09 Download gff for
FMO02489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7722539..7723223 | 1..685 | 99 | -> | Plus |
| 3R | 7723703..7724136 | 686..1104 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:40 Download gff for
FMO02489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3548261..3548945 | 1..685 | 99 | -> | Plus |
| arm_3R | 3549425..3549858 | 686..1104 | 93 | | Plus |
