FMO02491.5prime Sequence
1193 bp (989 high quality bases) assembled on 2008-05-23
> FMO02491.5prime
CAGTCGACATGGCAAAGTCGACACTTTATGCTGCTGGGGTGACCTGTCTG
GGCTTTATTTGCTTCGCCTTGGCATCTGTGGCCATTGGCATACCCATTTG
GGGTTACTACGATAGTCCATCGGGCGGCTATGACTTCGATCGAGGTTATT
TCGGACCGTTTAAGGTCTGCAAGCAATTGACTTATAATCGCGAGAAATGC
GGCAACGACGTGTCCAAGTTTAGATTAAGTAATGCGGTTTTTGTCAGTGG
ACTCTTGGCCATTGGCAGCTCAGCTGTGCTGGGCATCTTCTGCATTCTGT
CGGTCATTCAACACGCGATGATCTCATCCAGGGAGAAGGTGGTTATGCCC
TACACAACTCTAGTGATAGTGAAGTTAATGTTGGCATTGCTGGGAGGTGT
ACTGGCCATCATAGCGACGGTTTTGTTTGCTCTGCAAATTGATGAGCAGG
AGCGCTATGGCTTCAAGATATCGCGGGGCATTTCCTTCTATATACAGATT
GTGGCTATTGTTTTGACAATTGCTCTGTTCGTGGCCGCCCTGTACGATGT
GATCTACTCGCGCAGTCCAGGCGGAGATCCCACAATGGCGCTGGATGTGT
CATCTCCGGGCAGTGCCACTACGTTCAATAATCCTGGTTTCAAGGAGCCT
CGCAGTCGCAACGGCGTTTCGGTGACGGACGCATCCGGTAAGCCCTACAG
CGGAATCCGGAATGGAGCGGGAACGGCGGGCAGCGTGGCCTCCATGAGCA
CCACCGTGACCAGCGTGTCCAATGGATCCACCCTTGACTCGGTGACTCGT
TCACCGCTGCGATCGAGTCTGAAGAAGCCGAGACCACGGCCGGATCCACG
TTAGGCATTCAAATCCCGGCTATTCTGGATCCGGAAGCTCGCCACCTATG
CGGCGCAATGGAAGCGTGAGAGTCCGATTCAGACGCACAGCACCGAGGTG
GCAGCTTCAGACATTCGTTGGCGCGCGGGCCCAGGTAAGTGTCATATCAT
ATCATATCATAATCATAATCCACTAGCTAGGAATCCTGTCATGACTAGGC
TGGATTCCTCACAATAAAACGCCCGCGGCATCGGAGCGTCTGGACCATCG
ATGGATTCGAAGTCATATCTGGATTATCACGGATCAGCCACTGAATTCAT
TAGGCCCGCCCGTGCACTATTACGGAGAATCCCGGGTGGTGTC
FMO02491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13698-RC | 1617 | CG13698-RC | 616..1565 | 7..950 | 4610 | 99.4 | Plus |
| CG13698-RB | 2418 | CG13698-RB | 702..1651 | 7..950 | 4610 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18089184..18089646 | 950..494 | 2055 | 98.3 | Minus |
| 3L | 28110227 | 3L | 18090009..18090176 | 399..232 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 18090447..18090564 | 124..7 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 18090279..18090387 | 231..123 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 18089846..18089948 | 497..395 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:13:20 has no hits.
FMO02491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:18 Download gff for
FMO02491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 676..1636 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:57 Download gff for
FMO02491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1655 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:30 Download gff for
FMO02491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13698-RB | 695..1655 | 1..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:30 Download gff for
FMO02491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18089180..18089642 | 498..954 | 98 | <- | Minus |
| 3L | 18089846..18089946 | 397..497 | 100 | <- | Minus |
| 3L | 18090012..18090176 | 232..396 | 100 | <- | Minus |
| 3L | 18090279..18090386 | 124..231 | 100 | <- | Minus |
| 3L | 18090448..18090571 | 1..123 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:57 Download gff for
FMO02491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18082280..18082742 | 498..954 | 98 | <- | Minus |
| arm_3L | 18082946..18083046 | 397..497 | 100 | <- | Minus |
| arm_3L | 18083112..18083276 | 232..396 | 100 | <- | Minus |
| arm_3L | 18083379..18083486 | 124..231 | 100 | <- | Minus |
| arm_3L | 18083548..18083671 | 1..123 | 97 | | Minus |
