FMO02492.5prime Sequence
665 bp (665 high quality bases) assembled on 2008-05-23
> FMO02492.5prime
CAGTCGACATGACGAAGTTGGCGTCCACCGCAAGCCTTCTGCTTCTCGTT
CTGTCCCTCGGATGGGCGAAGCTCGAGGAGAAGCCACGGGAGAAGCGCCA
GTCCAACAAGCTGCACATCACCCTCCTTTACGAGTCCTTGTGCCCGGACA
GCAGGAACTTCATGCATCAGCTAGGACCCGTTTACGAGGAGTTCGGGGAC
TACATTGATATACTCTTAGTGCCCTTCGGAAAATCGCAGTCGGAGCGCAA
TGGTGCCATCTTCCACTGCCAGCACGGACCGGCTGAGTGCAAGGGCAATC
GCCTCCAGAGTTGCGTCATCAACAGCACCGCAAACCAGGCGGCGCAGGTT
AAATTCGTGGTGTGCCAGATGCTAGCTCCGGATTATTCCCGCATTGATCA
GTGTGCCAATGAGGCAGGCCTGCTCACCGATGTGGTCCACTGCCTGTCCA
GCGAGACGGGCACCAAATTGCAGCTGCAGGCGGAGCTGGTGACCAAACAG
TACAGCCCGAGCTTCATTCCCACCATCGTCTACAATGGCGTCTTCGATCA
GCAGCTGCAGGACCATTCGCTGCGCGATTTCCGCGGCACGGTTTGTTATA
TGTTGCGTCAACAAAACTTGCTGCCCAGCAGCAGCACAATCTGCCAGGCA
AGCTTTCTAGACCAT
FMO02492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9427-RA | 847 | CG9427-RA | 141..779 | 9..647 | 3195 | 100 | Plus |
| CG9427-RB | 719 | CG9427-RB | 113..651 | 109..647 | 2695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9625669..9625961 | 401..109 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 9625425..9625567 | 541..399 | 715 | 100 | Minus |
| 3R | 32079331 | 3R | 9625225..9625332 | 647..540 | 540 | 100 | Minus |
| 3R | 32079331 | 3R | 9626235..9626336 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:06 has no hits.
FMO02492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:19 Download gff for
FMO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9427-RA | 124..768 | 1..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:47 Download gff for
FMO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9427-RA | 135..779 | 1..647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:14 Download gff for
FMO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9427-RA | 135..779 | 1..647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:14 Download gff for
FMO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9625225..9625332 | 540..647 | 100 | <- | Minus |
| 3R | 9625427..9625564 | 402..539 | 100 | <- | Minus |
| 3R | 9625669..9625959 | 111..401 | 100 | <- | Minus |
| 3R | 9626235..9626342 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:47 Download gff for
FMO02492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5450947..5451054 | 540..647 | 100 | <- | Minus |
| arm_3R | 5451149..5451286 | 402..539 | 100 | <- | Minus |
| arm_3R | 5451391..5451681 | 111..401 | 100 | <- | Minus |
| arm_3R | 5451957..5452064 | 1..110 | 96 | | Minus |
