FMO02493.5prime Sequence
1200 bp (1033 high quality bases) assembled on 2008-05-23
> FMO02493.5prime
CAGTCGACATGCAAAAAACCAATAACTACAAAAGCTTCAAAATCTTCTTC
AAGAACGTTCCATTTCGTTCATATCCCGACTGCAAGAATGGTAAAGGTTC
AGGCCTAAAAGCCAAGTTGGCAAAGAAAATTCCTATAGAACGTGAAAAGT
TTTTGGGTATAAAGTGTCTGCACGGCAAGAAGATAATTGGCCAGATCAGT
GTTAATAGCGTGATTGGAGGAATGCGAGGACTTCCACTTTTGTTTTGCGA
GACATCCAGCTTGGACAAAAACAAGGGTATTTATTACCGTGGAAAACTGC
TTAAGGATGTGTGTGCCAAACTGCCACGGGTGCAAGAGGGCACACAAGAG
GGCACTCCCGAAGGATGTTTCTTCCTGCTGACCAGCGGATCGATGCCCAC
GAAGAAGGAGGCACAGGAAGTGACCAACGAGTGGCTGAAGCGGGGCTCAG
TTCCGCGCTACTGCCTCCGGATGATCGACTCCATGGACAAGCGGGTGCAT
CCGATGGCCCAATTGTGCGCCGCCAGTGCCTGTCTCAATCCGCAGAGCCA
GTTCGTCGAGGCTTACACCAAAGGGGCCAGACGTGCAGACTACTGGAAAT
ACTCCTACGAGGATTCAATGAACCTCATCGCCATGCTGCCCACCGTGGCG
GCTGCCATCTATTCTAACGTGTTTAGGGATGGCGAAGGTTCACGGGAGGT
CAACTATGAGGAGGACTGGTCCGGCAACTTCTGCCGCATGCTTGGACTAC
CCGAAAAGGATTTCGTTGATCTTATGCGGCTCTACATGATCCTGCATGCA
GATCATGAGAGCGGCAATGTTTCCGCCCATGCTTGCCACCTAGTCGGAAC
GGCGCTCAGCGATCCCTTCCTGTCTTTCTCGGCCAGCATGTGCGGCCTGG
CTGGGCCACTTCATGGTTTGGCCAATCAGGAAGTGCTGGTTTGCTGACAA
GCTTAGAAGCCATGCGATGACCCCTCCGATGAGAGCTAAAGAAGTTCATC
GATGATCGCCTGAAGGGGCAGTCATTCCCGCTACGAACGCTGTCTTCGGA
CACCGATCTCGTTCGTCTGCAACGAGTTGCATGAAGCACTGCAAGATGAT
CAGGCGTTAAGCTGGTGACCGCTGTGTAGATCTAACAAGGGGGTTCAGAA
GCTCACAGGTACGATCGGATATCAACGCGTCGAGAGTGCCCACATTCTCC
FMO02493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14740-RA | 1600 | CG14740-RA | 99..1235 | 9..1120 | 5030 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:20:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12061725..12062482 | 1006..256 | 3495 | 98.9 | Minus |
| 3R | 32079331 | 3R | 12062549..12062756 | 259..52 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 12062802..12062846 | 53..9 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:20:18 has no hits.
FMO02493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:20 Download gff for
FMO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14740-RA | 91..1103 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:52 Download gff for
FMO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14740-RA | 91..1103 | 1..1006 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:19 Download gff for
FMO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14740-RA | 91..1103 | 1..1006 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:19 Download gff for
FMO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12061725..12062478 | 260..1006 | 99 | <- | Minus |
| 3R | 12062549..12062754 | 54..259 | 100 | <- | Minus |
| 3R | 12062802..12062854 | 1..53 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:52 Download gff for
FMO02493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7887447..7888200 | 260..1006 | 99 | <- | Minus |
| arm_3R | 7888271..7888476 | 54..259 | 100 | <- | Minus |
| arm_3R | 7888524..7888576 | 1..53 | 92 | | Minus |
