FMO02494.5prime Sequence
1188 bp (1017 high quality bases) assembled on 2008-05-23
> FMO02494.5prime
CAGTCGACATGTTGGGAACTTTGCTGTGGATTTTCTTCGTCGGCCTGCTG
CTGTGTGCGTTCCTCTTTTCGAAGACCACCAAGGAGTTCCCGAAGTCCTG
GTTCGAGTGGAAGACTGAGTTTCGGTATCAGTACCTGGGAATCGTTGGGC
TCGTCCACGATGCCCAGTATAAGGCACGGGATCGAGTGGCACTTTATAAA
CAACCGGACCGCATTGCTGTCATCACCGGAGGCAATCGCGGCATCGGACT
GCGGATCGTGGAGAAGCTGCTGGCCTGCGACATGACTGTCGTCATGGGCG
TTCGTGATCCCAAAATTGCCGAAACCGCAGTTGCATCGATAGTCGACTTG
AATGCTACCAAGGGCAAGCTCATCTGCGAGCAACTGGATGTTGGGGATCT
GAAATCCGTAAAGGCATTTGCTCAGCTCATCAAGGAGCGGTATTCAAAAG
TGGATTTGTTGCTGAACAATGCTGGCATCATGTTTGCGCCCTTCAAACTA
ACCGCCGATGGCTACGAGTCGCACTTTGCCATCAACTTCCTGGGACACTT
TCTGCTCACCCACCTGCTTCTGCCTCAATTGAGGGCGGCAGGCAAGGAGG
GAAGGAACTCCAGGATCGTGAACGTCAGCTCCTGCGTGAATCTCATTGGA
CGCATCAACTATAAGGACATTAACGGAACAAAACACTATTACCCGGGAAC
CGCCTACAGTCAGTCAAAGCTTGCTCAGATCTTGTTCACCCGCCATCTGC
AGACACTGCTGGATGCAGAAAAGTCGCACGTGCAGGTCAATGTGGTGCAT
CCGGGCATTGTGGACACGGATCTGTTCGAGCACTCGGCCACCACATCGGT
GCCCATTTTCAAGAAGCTATTTCTTCAGACTCCGGGAAGGGGATCCCGCA
CGGTGGTCTTCGCGGCCATTGATCCCTCCATCGAGGTCAGGTGGTACTTA
CCTCTCAACGGCGGAAAGGGTCCTTTCATCCGGATGCCAGAAGCCGGCAA
GTGCGAGCAGCTTTTCCAGTTCCTCTGCGACTGTTGAATCAGCAGTTACG
GAAATGGGCGATTCGCAAGCTTTCTAGACCATTCGTTTGGGCGCGCGGGC
CCAAGTAATTGCATATTCATATCATAATCGTAGCTATCACTAGCTAGAAT
CTGGCCTGACATGCTGGATTCTCCCCACAAAAAAGTTC
FMO02494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11200-RC | 1335 | CG11200-RC | 153..1210 | 9..1057 | 4940 | 98.5 | Plus |
| CG11200-RA | 1447 | CG11200-RA | 265..1322 | 9..1057 | 4940 | 98.5 | Plus |
| CG11200-RB | 1688 | CG11200-RB | 506..1563 | 9..1057 | 4940 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20305086..20305468 | 679..297 | 1915 | 100 | Minus |
| 2R | 25286936 | 2R | 20304671..20305028 | 1031..680 | 1385 | 96.4 | Minus |
| 2R | 25286936 | 2R | 20306415..20306595 | 189..9 | 905 | 100 | Minus |
| 2R | 25286936 | 2R | 20306243..20306352 | 298..189 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:40 has no hits.
FMO02494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:06 Download gff for
FMO02494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RA | 529..1571 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:00:40 Download gff for
FMO02494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 500..1542 | 1..1038 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:27 Download gff for
FMO02494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11200-RB | 500..1542 | 1..1038 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:27 Download gff for
FMO02494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20304663..20305028 | 680..1038 | 96 | <- | Minus |
| 2R | 20305086..20305467 | 298..679 | 100 | <- | Minus |
| 2R | 20306244..20306351 | 190..297 | 100 | <- | Minus |
| 2R | 20306415..20306601 | 1..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:00:40 Download gff for
FMO02494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16192168..16192533 | 680..1038 | 96 | <- | Minus |
| arm_2R | 16192591..16192972 | 298..679 | 100 | <- | Minus |
| arm_2R | 16193749..16193856 | 190..297 | 100 | <- | Minus |
| arm_2R | 16193920..16194106 | 1..189 | 97 | | Minus |
