FMO02496.5prime Sequence
1168 bp (991 high quality bases) assembled on 2008-05-23
> FMO02496.5prime
CAGTCGACATGTTTAGGAAACTGCTTAAGATGTGGATTCTGCTCCGACCC
ACCCACTGGCTGATCCTGATAGCCCTGTGCGCGGTCACCTGTGCAGGTTA
CTGGTTGCTTTGGTCAGAGATTCGCCTGGAACATGCCTTCAAGCCGCTTT
CCAAGCTGGGCGATTCTCTGAGCCCAGATCAGCATGCCTCGTCCACCACC
GATGACTTTGACTTCGAGGAGCACCTAGTGGTGCTTTACAATCGCGTACC
GAAAACGGGATCCACCAGCTTTGTTAACATAGCATACGATCTGTGCAAGC
CCAATAAATTCCATGTGCTGCACATCAATGTCACTGCCAACATGCACGTC
CTCTCGCTTCCCAATCAAATCCAATTCGTGCGCAATGTTTCCAGGTGGCA
CGAGATGAAGCCAGCTCTTTATCACGGCCACATGGCCTTCCTAGACTTCT
CAAAATTCCAAATCGCCCACAAGCCCATCTACATCAATTTGGTGCGCAAA
CCGCTCGACAGACTTGTCTCCTACTATTACTTTCTACGCTTTGGCGACAA
CTACCGACCGAATTTAGTCCGCAAGAAGGCGGGCAATAAAATTACCTTCG
ATGAGTGCGTGGTGCAGAAACAACCCGACTGTGATCCCAAAAACATGTGG
CTGCAGATACCCTTCTTCTGTGGCCATGCAGCCGAGTGCTGGGAACCCGG
CAGCAGTTGGGCCTTGGGACCAGGCCAAGCGCAATCTAGTCAACGAATAC
TTCCTAGTCGGAGTCACAGAGCAGATGTACGAGTTTGTGGATCTGCTCGA
GAGATCTCTTCCAAGAATTTTTCACGGCTTTCGTGAGCACTATCATAATT
CAAACAAATCTCATCTGCGGGTGACATCTTCCAAGCTTCCGCCCAGCGAA
TCGACAATTAAATCCATTCAAAAGACAAAAATCTGGCAAATGGAAAACGA
TTTGTTACGATTTCGCGCTGGCTCATTCGAGTTCAACAAGAAGAGCTCAT
GCAGCGGACACAGCAACGTGCAGAACTTCATGTACGAAAAGAATCGCCCA
AAGCAGCTTTCTAGAACATTCGTTTGCCGCCGGACCAGGTAAGGTGTCTA
ATCTAATCCATATCATAATCCTAATCCAACTAAGGCCTTAGGGAGATTCC
TGGCCTATGATCACTGAT
FMO02496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hs2st-RA | 1652 | CG10234-RA | 131..1178 | 8..1052 | 4940 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19444109..19444428 | 454..135 | 1600 | 100 | Minus |
| 2L | 23513712 | 2L | 19443631..19443851 | 815..594 | 1045 | 99.1 | Minus |
| 2L | 23513712 | 2L | 19443314..19443549 | 1046..814 | 815 | 94.5 | Minus |
| 2L | 23513712 | 2L | 19443912..19444050 | 593..455 | 695 | 100 | Minus |
| 2L | 23513712 | 2L | 19444493..19444620 | 135..8 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:12:48 has no hits.
FMO02496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:43:09 Download gff for
FMO02496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10234-RA | 135..1189 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:01 Download gff for
FMO02496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs2st-RA | 135..1189 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:13 Download gff for
FMO02496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hs2st-RA | 124..1178 | 1..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:13 Download gff for
FMO02496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19443631..19443851 | 594..815 | 99 | <- | Minus |
| 2L | 19443912..19444050 | 455..593 | 100 | <- | Minus |
| 2L | 19443307..19443547 | 816..1052 | 94 | <- | Minus |
| 2L | 19444109..19444427 | 136..454 | 100 | <- | Minus |
| 2L | 19444493..19444623 | 1..135 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:01 Download gff for
FMO02496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19443307..19443547 | 816..1052 | 94 | <- | Minus |
| arm_2L | 19443631..19443851 | 594..815 | 99 | <- | Minus |
| arm_2L | 19443912..19444050 | 455..593 | 100 | <- | Minus |
| arm_2L | 19444109..19444427 | 136..454 | 100 | <- | Minus |
| arm_2L | 19444493..19444623 | 1..135 | 97 | | Minus |
