FMO02504.5prime Sequence
1208 bp (1025 high quality bases) assembled on 2008-05-23
> FMO02504.5prime
CAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCACCGCAGCTG
TGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGGGCTTCGGT
GGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTGCTACGTTT
CCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCATCGAGAAC
TTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCCGGCCTGGA
CATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGACCTAAAGG
AGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGAAGCGCAGC
CATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAACGAGGGATC
GGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGGCAGGTTCG
TCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACGGGCTGGAT
CTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCGGATCGCGA
GAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGACGAGCACG
GCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGATCGACGAG
GCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTGCACATCAT
GTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTACAATGCTC
CGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCTCCATTGAC
TACCTGCTGAAACTGGGCGCCCCGCCCGGAGAGCTGGTGATGGGCCTGCC
CTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCTGACGACGT
CAGCGAAGGCGTAGCTTCAGGGACCCTACACGCGGGAGGACGGCTTCCTG
GCTACACGAGATCTGCAGACACTGAGCACCAGACCTCCGGATGGACAGGG
AGTGGGATCCGCAAACCAGCAGTGCTGACAGTCGGCGAACGTCTTCACCA
GGAGGATCACGTGGTGACCTACGACAGCTCCCGCCTCATTCGCAACAAGG
GTTTGTTTCGCCATGTTCAGCGGCTTGCCGGAGTGTGAATCGGATTGGTC
GCTGTGAACCGGACGACTCTCCTGGTATACCTGCACGAGCTTGTGAAGAA
GACAGCAC
FMO02504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cht2-RB | 2690 | CG2054-RB | 931..2073 | 9..1135 | 5010 | 97.1 | Plus |
| Cht2-RC | 1911 | CG2054-RC | 367..1509 | 9..1135 | 5010 | 97.1 | Plus |
| Cht2-RA | 1645 | CG2054-RA | 101..1243 | 9..1135 | 5010 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1753438..1753944 | 785..279 | 2535 | 100 | Minus |
| 3L | 28110227 | 3L | 1754001..1754168 | 279..112 | 825 | 99.4 | Minus |
| 3L | 28110227 | 3L | 1753068..1753311 | 1020..785 | 760 | 95.1 | Minus |
| 3L | 28110227 | 3L | 1754236..1754342 | 115..9 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:21:08 has no hits.
FMO02504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:17 Download gff for
FMO02504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2054-RA | 90..1207 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:45 Download gff for
FMO02504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht2-RA | 95..1212 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:43 Download gff for
FMO02504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cht2-RA | 95..1212 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:43 Download gff for
FMO02504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1752976..1753310 | 786..1103 | 92 | <- | Minus |
| 3L | 1753438..1753943 | 280..785 | 100 | <- | Minus |
| 3L | 1754001..1754165 | 115..279 | 99 | <- | Minus |
| 3L | 1754237..1754348 | 1..114 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:45 Download gff for
FMO02504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1752976..1753310 | 786..1103 | 92 | <- | Minus |
| arm_3L | 1753438..1753943 | 280..785 | 100 | <- | Minus |
| arm_3L | 1754001..1754165 | 115..279 | 99 | <- | Minus |
| arm_3L | 1754237..1754348 | 1..114 | 96 | | Minus |
