FMO02506.5prime Sequence
1071 bp (1028 high quality bases) assembled on 2008-05-23
> FMO02506.5prime
CAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCATGCAGCAT
CCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTCAGCGAGGC
AGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATCGCAGAGGT
TCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCAAGGTGCGC
CTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCACTGGAGGG
CAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATTGACGCTCC
CACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACTACGATGTG
TCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGCATCATGAA
ATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCAACCGACGA
TCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACTACTATATG
CCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGATCCACGCT
GATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCGGGTGCGCA
AGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCATCATCACC
GTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAGGCGGAGGA
CTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTGCGAGTGCC
ACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGAACAAGTAT
TGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAGAGCTGCAC
CACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGACCCGGCTG
CACCCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGGCGGTACAG
TGGATCCCGATACACCACCCTGTACAGTGTTGCAAGCTTTTCTAGACCAT
TCGTTTGGCCGCGCGACCCAGGTAAGTGGTCATAATCATATCATATTCAT
ATCATAATCAAACTAGCCTAG
FMO02506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf1-RA | 1896 | CG7103-RA | 327..1302 | 8..981 | 4830 | 99.8 | Plus |
| Pvf1-RB | 1804 | CG7103-RB | 266..1210 | 39..981 | 4675 | 99.8 | Plus |
| Pvf1-RC | 2783 | CG7103-RC | 327..1212 | 8..893 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18840630..18841120 | 403..893 | 2455 | 100 | Plus |
| X | 23542271 | X | 18838054..18838342 | 8..296 | 1445 | 100 | Plus |
| X | 23542271 | X | 18840381..18840460 | 296..375 | 400 | 100 | Plus |
| X | 23542271 | X | 18842218..18842307 | 894..981 | 350 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:16 has no hits.
FMO02506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:19 Download gff for
FMO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7103-RA | 299..1280 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:50 Download gff for
FMO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf1-RA | 321..1302 | 1..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:46 Download gff for
FMO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf1-RA | 321..1302 | 1..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:46 Download gff for
FMO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18838048..18838342 | 1..296 | 98 | -> | Plus |
| X | 18840382..18840460 | 297..375 | 100 | -> | Plus |
| X | 18840532..18840558 | 376..402 | 100 | -> | Plus |
| X | 18840630..18841120 | 403..893 | 100 | -> | Plus |
| X | 18842218..18842307 | 894..981 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:50 Download gff for
FMO02506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18732081..18732375 | 1..296 | 98 | -> | Plus |
| arm_X | 18734415..18734493 | 297..375 | 100 | -> | Plus |
| arm_X | 18734565..18734591 | 376..402 | 100 | -> | Plus |
| arm_X | 18734663..18735153 | 403..893 | 100 | -> | Plus |
| arm_X | 18736251..18736340 | 894..981 | 97 | | Plus |
