FMO02511.5prime Sequence
1004 bp (967 high quality bases) assembled on 2008-05-23
> FMO02511.5prime
CAGTCGACATGTCGGACTTTGAAATGGAGGACAGTGCCTCGGGCTACGAC
TCAGGGGATAACTCAGATGCCGAGCTGCAAGCGGCATTTGAGCGAGGCGA
CTTGAAACCAGGCCTAAATGTGGAATTCAATGGCCAGAGAGACAAAGTGA
ACGATGTGACCAAACTGCTGGCCAAGACAGAGGCTATCAAGATGCAACTG
CCTTGGCTGGAACGCCTGGACATGATCAACACACTAGCTCCACTGGCGCC
GGAACTCGCTGTACAGCTGGAGAAGCACGAGCAGAAGCGGGCCAATCTCT
TCAAGGGCAACGCCAAGCTGCCCTACATTCGGCCCGAGGAGGATCCCGTC
CTGAATGACTTCAAGAGGGAGATGCTCTTCCACCGACAGGCGCAAAGTGC
TGTTCTGGAGGCCATTCCCCGCCTTCACGAGCTGGGCATAAAGACTCGTC
GACCCGATGACTACTTCGCTGAAATGGCCAAGTCCGACGAGCACATGCAG
AAGGTGCGCGCCAACCTGATGGCCAAACAGCAAGGACAGGCGAAATCCGA
GCGCATCAAGCAGATCCGCGAGCAGCGCAAGATGGGCAAGATGCTGGCCA
AACAGACCAAGGTCCAACGCGAAGCCGAGAAGAAGGACATGCTGGACAAA
CTGAAGAAGTTCCGCAAGGGCAAGCTGAAAAACCTGGACTTCCTGGAGGA
CGCCAAGGCGCTTGAGTCCAAGCAGAAGCAGTCAGCCGAGAATCGCAAGA
GCGCAACAAGAAGTTCGGCTTCGGCGGCAAGAAGAAGGGCCTCAAGAGGA
ACACAAAGTCCTCCTCCGCGGGATTGGATGGCGACAAGTCCTCCAGCGCC
AGCGGGGCGTAAAGGCAAGTGCTTCGGTCAACAAGCGGCTTGCCAATCGC
GACGCATTAAGGCCAAGGGCAGAAAGGCAAGCTTTCAGACCATTCGTTTG
GCGCCGCGGGCCCAGGTAGTGGTCATTATCATATCATATCATAATTCATA
TCAC
FMO02511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1542-RA | 1207 | CG1542-RA | 84..1007 | 6..926 | 4515 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31213813..31214584 | 158..926 | 3680 | 99.4 | Plus |
| 3R | 32079331 | 3R | 31213670..31213755 | 73..158 | 430 | 100 | Plus |
| 3R | 32079331 | 3R | 31213541..31213609 | 6..74 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:28 has no hits.
FMO02511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:10 Download gff for
FMO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 126..1058 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:10 Download gff for
FMO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 78..1010 | 1..930 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:49 Download gff for
FMO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1542-RA | 78..1010 | 1..930 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:49 Download gff for
FMO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31213535..31213609 | 1..74 | 96 | -> | Plus |
| 3R | 31213672..31213755 | 75..158 | 100 | -> | Plus |
| 3R | 31213814..31214584 | 159..926 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:10 Download gff for
FMO02511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27039257..27039331 | 1..74 | 96 | -> | Plus |
| arm_3R | 27039394..27039477 | 75..158 | 100 | -> | Plus |
| arm_3R | 27039536..27040306 | 159..926 | 99 | == | Plus |
