FMO02516.5prime Sequence
1188 bp (1040 high quality bases) assembled on 2008-05-23
> FMO02516.5prime
CAGTCGACATGGTTAGGTCAGCTCTCGTTGTTGCAGCCATCGCACTTTCC
GTACTTATTGCACTGCAGGGCGTGGATGCCGACAAAAAGCAGAGCAAGAA
GTACAGCAAGGAGGCCAACGACCCGCATTTTCAGCAAGTAAAGCAGGAGA
AGTATGATCCGGATTTTAAGAGCATCCAGCGGCCATTTCGCATGGCCAAG
TTGAATCTCGTGTGGGCCAAGGCGCAGAATCGCTTAACAGAGCCCAAGCT
CAAGTCACTGTACATGGAACTCAAGATCCACGATAAGGAGGAGATCGCTT
GGAAGCAGCTCAACTCGCAGCACAAGGACAAAGACGGGCTGAAGGCCGAC
GAACTGCGCCGCAAGCTCATTGGCATCATGAGCAGCTACGATCTGCTAGA
GCATTTTGACGACACTCAGGATACGGAGAAGCTTAAGCCCTACAAGAAAT
TCCACGACGCCGAGGAGCGACACAGAAACAAGAGTCTTTTCAAGGACAAG
AAACTCAACCGACTTTGGGAGAAGGCCGAGATTTCCGGATTTACTGCAGA
GGAATTGAAATCCTTGAAACAGGAGTTTGACCATCACCAGGATAAAGTGG
ATGTGTACTACAGCTTGCTGGAAAACATTGGCACCGTAGACACCGACAAG
CATGAAAATGCTATTAACACGGAAGACTTGGACACCTACAATCTGATTTC
GAATGATGTCAATGAGAACGACATCAAAACCCATGCGCAAAACGTGAAGA
GTTTCGTGAACGACCTTAACACTCTGCGAGGACATCACACGGGCATCAAG
GATCACTACGATAGGCTGGAACGCCTGGTGTCCTCCGGTCCACACAGTCA
GGACTTCATTGAACCCAAGTCCAGGGTCTATGGCGAGTGGCCCAGGCTAG
CAATTTACGGTTAAAGAACTGGAGTCCATTAAAACCGAATTGCATCACTT
CGAAAGTCGGCCTATAAAGCTGCGTCACTGCATGCCGAGCATGCTTTGCA
AAAGGAGAAATACAAGGGCGAAAAAGTGAAGAAAAAAGCAGCCGCTTTGA
GGAAATGGAGGATCAGCTGAAGAAGCTAACTCGCAAGTGGAAAAGCCTCA
AGAGAACTGAAAAAACAATCTCAGCAACTGAGCTGCAGCTTCTGAACCAT
CCTGGGCGCGGCCAGTAATGGCTCATAATCTCATAAAC
FMO02516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8507-RA | 1384 | CG8507-RA | 88..1207 | 9..1121 | 5270 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9792396..9792758 | 658..1017 | 1590 | 97.8 | Plus |
| 3R | 32079331 | 3R | 9791570..9791791 | 9..230 | 1110 | 100 | Plus |
| 3R | 32079331 | 3R | 9791846..9792061 | 231..446 | 1080 | 100 | Plus |
| 3R | 32079331 | 3R | 9792121..9792334 | 444..657 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 9792811..9792883 | 1015..1086 | 285 | 95.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:21:01 has no hits.
FMO02516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:33 Download gff for
FMO02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8507-RA | 95..1204 | 2..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:02 Download gff for
FMO02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8507-RA | 82..1191 | 2..1107 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:00:00 Download gff for
FMO02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8507-RA | 82..1191 | 2..1107 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:00:00 Download gff for
FMO02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9791564..9791791 | 2..230 | 98 | -> | Plus |
| 3R | 9791846..9792061 | 231..446 | 100 | -> | Plus |
| 3R | 9792124..9792334 | 447..657 | 100 | -> | Plus |
| 3R | 9792396..9792757 | 658..1016 | 98 | -> | Plus |
| 3R | 9792813..9792901 | 1017..1103 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:02 Download gff for
FMO02516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5618535..5618623 | 1017..1103 | 91 | -> | Plus |
| arm_3R | 5617286..5617513 | 2..230 | 98 | -> | Plus |
| arm_3R | 5617568..5617783 | 231..446 | 100 | -> | Plus |
| arm_3R | 5617846..5618056 | 447..657 | 100 | -> | Plus |
| arm_3R | 5618118..5618479 | 658..1016 | 98 | -> | Plus |
