FMO02517.5prime Sequence
1213 bp (894 high quality bases) assembled on 2008-05-23
> FMO02517.5prime
CAGTCGACATGAAATCAGATAACTACCGTCTCATACAGGAGGTGTCCAAG
CGGCGGTGCCTGTGGGACACAAACATGTCCATTTCGTACCGCAACCAGGA
CTCACCTCTCCAGTGGGCGAGTGTCGCGCATATAATGCAGCAGGATGTCT
CGATCTGCAAGAAACGTTTCAAGGGAATGCGGGACAGCTACCGGGCAGAG
GTGCGCAAGATACAGCAGAAACGAATCGAGATGTCCCACTGGCCATACTT
TCGCTCACTGGAGTTCATGCGCCAAATCTTCGATCCGGAGGGCCTGGTGC
CCTTTCCACCAAAGCCCTTCGTGATGAACACCGAGCAGCCGGAAGTCTTC
GAGCCCACCCGACTGGTTGACTTCGCTATCGATTTGGATTTGGACAATGA
TGACTCTGTTGACTTTGAAATCATCGAGGACATATTTAAGCGGGAGCCGT
CAGTGCCCCAGGACTCTGGCTCGGATAAAGGCTCGCTGATCAAGCCTTTG
GATTCTTCATCCTCGGGCGCCCATCGTTCCGATCAGGATCTATCGCCCAC
ATTGCCCATACACTTGCCGCGCCACCAACAATTCCTGCCACGTCCACCCC
CGCCTTCGAAGAGAGGACGTCGGAAGAAAACTTCGCCGTCTAACGATGTC
CCCTTATTGAATGGATACGCCAGCCAGGCGTCAAAGTCTACCACTGAACC
CGATCTAAAGAACGATTCGGACTTGAGTTTCTTGATGAGCATGATGCCGC
ACGTAAAGTCTCTGTCAGCCATTAGCAATCTTAAGTTTCGAATGGAGATG
GCGCGCGTTCTGGTGGAACTCAGGGATGAGGATCATCACATGCTCGCGGC
GGCGGGACCCGAAGACGTTCTACAGCGCAGTATGCCCAAACTAACACCAG
CCCCGAATTCCAGTTTTGCCACTCAGCATGGAGAAATCCCAGTACCATCT
ATCCAATTCAGCTACCAATCATAGCCGACAAACACCAACTTCGTTTGACT
ATGTCGACCGCTCCATGCTGAGTGGGATGTTCAGAATAAAGAATGGAGCC
TCTGCTAGCAAGCTTTCTAGACATTCGTTTGGGCCGCGGTCCAGGTAGTT
GTCTAATCGATATCTATGCTATTCATATCACACCTACCTAGGAATCTGGT
CTGACATGCTTGGATTCCTCTAAAAACGCCCAGGGATACGAAGCTCCTAG
ACCATATCCGAAA
FMO02517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11723-RB | 1907 | CG11723-RB | 251..1301 | 8..1057 | 4855 | 97.8 | Plus |
| CG11723-RA | 1707 | CG11723-RA | 251..1301 | 8..1057 | 4855 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2145942..2146814 | 1017..147 | 4050 | 98.6 | Minus |
| 2L | 23513712 | 2L | 2146886..2147025 | 147..8 | 655 | 97.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:29:29 has no hits.
FMO02517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:34 Download gff for
FMO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 255..1322 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:50 Download gff for
FMO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 243..1310 | 1..1065 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:02 Download gff for
FMO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11723-RA | 243..1310 | 1..1065 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:02 Download gff for
FMO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2145942..2146813 | 148..1017 | 98 | <- | Minus |
| 2L | 2146886..2147031 | 1..147 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:50 Download gff for
FMO02517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2145942..2146813 | 148..1017 | 98 | <- | Minus |
| arm_2L | 2146886..2147031 | 1..147 | 95 | | Minus |
