FMO02518.5prime Sequence
1224 bp (970 high quality bases) assembled on 2008-05-23
> FMO02518.5prime
CAGTCGACATGAGTGGCGGCACCATGCTATATGGCGGCGACGAGATCGGC
GCCCTGGTCTTCGATCCTGGACATCATTCCTTGCGAGTGGGCTACGCACA
GGAGGATTCGCCCAAGGCGGAGATACCCTCGGTTGTGGGGATTGGAGCAG
CTCCAGAGACCAATCTCGATCCGGAAACTAAAACAGACAACAATGCCACG
CCAAATAATGCTGACCAGCGCAAGTTCTATGTGGACACCAACTACGTGAC
CGTTCCCCGTTCCAATATGGAGGTGCAGACCTATATGAAAGACGGCATGA
TTGACAACTGGGACCTGTTTGAGAAGGTTATTGATTATGCCTACGCCAAT
GTCATTCAGTCGGAGCCGGAATACCATCCCGTGCTCTTTTCCGAGGCATC
GTGGAATGTCCGCAACAACCGCGAGAAGCTAACCGAGCTTATGTTCGAGA
AGTACAATGTTCCAGCCTTCTTTCTGGTAAAGAACGCCGTTCTGGCTGCC
TTCTCCAGCGGGCGGGCCACCGCTTTGGTTGTCGATAGTGGAGCCACCCA
CACCTCGGCCGTTCCCGTCCATGAGGGCTATGTCCTATCCCAGGCGGTGG
TTAAGTCACCCCTGGGTGGAGACTTCCTTTCACGACAGTGCCGCCAGCAT
CTGGAGAAGCACGGCATTGATCTGTCGCCGGTATACAAGATTGCCTCCAA
AGACGTTGTTAAGGAGCGCGACAACGGACGCTTCACGCTGCGCAAACTGC
CAGAGAACCTAACTCAGTCGTGGCAAAACTACATGTTGCAGCTCATGAAT
GCAAGACTTTCAGATGAATGTGCTGCAGGTCCTAGAAAATCCGTTCGACG
AACGGGTTGCTGCTCAAATCCCCGACGGTACACTATGAGTTTCCTAATGG
TTATCATCAGACTTTGGCTTCTGAGCGGTTCAAGAATAGCCGAGAGTCTT
CTTTTGACATGCAATGCTGGGAAGCTGGCCAATTGCCGTCCACCCATTGT
TGGCCATGTGTGATGCGATGTGCCGCTTTCACTTTTCGGCTCAGTTGTCG
TACTGGGGCAATACCCTTTCTGCAAGCTTCCGGACCCCTAAATCGCGATT
CTCCAGCCTGCGTGCCCCCCTTCAATACCGCGCTTAAATGAATTTTCTGC
ATGGCACCGTGAAGCGGAGATTGAGAGCTCGGAATTGCGTGGTCTATTCT
CATGCCACGCACAATGAGTCACAT
FMO02518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bap55-RA | 1473 | CG6546-RA | 124..1310 | 9..1200 | 5040 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17429725..17430562 | 1051..208 | 3605 | 97 | Minus |
| 2R | 25286936 | 2R | 17430642..17430840 | 207..9 | 995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:43:59 has no hits.
FMO02518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:35 Download gff for
FMO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6546-RA | 96..1219 | 9..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:55 Download gff for
FMO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1247 | 9..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:42 Download gff for
FMO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bap55-RA | 124..1247 | 9..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:42 Download gff for
FMO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17429720..17430562 | 208..1055 | 97 | <- | Minus |
| 2R | 17430642..17430840 | 9..207 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:55 Download gff for
FMO02518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13317225..13318067 | 208..1055 | 97 | <- | Minus |
| arm_2R | 13318147..13318345 | 9..207 | 100 | | Minus |
