FMO02519.5prime Sequence
1225 bp (1038 high quality bases) assembled on 2008-05-23
> FMO02519.5prime
CAGTCGACATGCTAATAAATCATTTAATAGTCGTATTATTAATTAGTTTG
GTAGGAACAGGAGGTGCAGAAGATGACGGACTTTGCAGTGCCGATCAAAA
ATCCTGTGCACAAAGTGAACCCGACCAAATAAACGAGGATGAATTTAGCT
TCAAGATACGTCGCCAGATCGAAAAAGCCAATGCCGACTACAAGCCGTGC
AGCAGTGATCCCCAGGACAGCGACTGCTCCTGCCACGCAAATGTTCTGAA
ACGGGATCTCGCGCCCTACAAGTCAACAGGTGTCACCCGGCAGATGATCG
AGAGTTCAGCGCGTTACGGCACCAAATACAAGATCTACGGACATCGCCTG
TACCGGGATGCCAACTGCATGTTCCCAGCCCGCTGTGAGGGCATTGAACA
CTTCCTGCTGCCGCTGGTGGCTACGCTGCCCGACATGGACTTGATCATCA
ATACCAGGGACTATCCGCAGCTGAATGCGGCGTGGGGTAACGCGGCTGGT
GGTCCCGTCTTCTCCTTCTCCAAGACAAAGGAGTACCGCGACATCATGTA
TCCAGCGTGGACATTCTGGGCCGGAGGACCGGCCACCAAGCTCCATCCTC
GTGGCATTGGACGCTGGGATCAGATGCGCGAGAAGCTGGAGAAGCGAGCG
GCAGCTATACCCTGGTCACAGAAACGCAGTCTGGGCTTCTTTCGCGGTTC
ACGCACCTCGGACGAACGTGATTCTCTTATTCTGCTCTCGCGCCGCAATC
CGGAGCTAGTCGAGGCTCAATACACCAAAAATCACGGCTGGAAGTCGCCT
AAGGATACACTGGACGCACCGGCTGCTGATGAGTGTCCTTCGAGGACCAC
TGCAAGTACAAGTACTTGTTCAATTTCCCGCGGTGTGCCCGCCAGTTTTC
GTCTGAGCACTTGTTCCTCTGCAAGTCGCTGGTCTTCCATGTGGGCGACG
AGTGCAGAGTTCTCTACGACAACTAAGCCCTGGGTGCACTATGTGCCGCT
CAAGAGCTACCCAGTCAGCAGGAGTACGAGCACATCTTGTCTTTTTCAAG
AAAAACGATGCGCTGGACCAGGAAATCCGCTCACGTGATCGAACTTCATC
TGGGAGACATTGGCCATGAGACTCAATGCTCATTGGCGCGCAAGCTCTCA
CGAATTGTGAAGCTGCTGCCAATACAAGTACCGAAGAATCTCACCTAATA
TTACATATTAGGGCTCCTAAAAGAA
FMO02519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rumi-RA | 1534 | CG31152-RA | 74..1252 | 9..1175 | 5160 | 97.1 | Plus |
| rumi-RB | 1530 | CG31152-RB | 74..1248 | 9..1175 | 5090 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22749398..22750338 | 1077..145 | 4155 | 98.3 | Minus |
| 3R | 32079331 | 3R | 22750389..22750524 | 144..9 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:36 has no hits.
FMO02519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:37 Download gff for
FMO02519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31152-RA | 31..1219 | 1..1178 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:16 Download gff for
FMO02519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 67..1255 | 1..1178 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:06 Download gff for
FMO02519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rumi-RA | 67..1255 | 1..1178 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:06 Download gff for
FMO02519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22749293..22750338 | 145..1178 | 96 | <- | Minus |
| 3R | 22750389..22750531 | 1..144 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:16 Download gff for
FMO02519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18575015..18576060 | 145..1178 | 96 | <- | Minus |
| arm_3R | 18576111..18576253 | 1..144 | 97 | | Minus |
