FMO02522.5prime Sequence
853 bp (94 high quality bases) assembled on 2008-05-23
> FMO02522.5prime
CAATCCACATGAGCAAATCACTCTTTGATGTTCCGTTGACCATTGAACCA
TAACATGATTTGCGTTTTGTGGGTCCCTTCACCCGACCCGTTGTCACAAT
CATGACTCTGCGCAACAACTCGGCTCTGCCTCTGGTCTTCAAGATCAAGA
CAACCGCCCCGAAACGCTACTGCGTACGTCCAAACATCCTTTAGATAATT
CCCTTTCGATCAACCCAGGTGGAGATCTGCCTTCATCCATTCGTCTACGA
TCTGCAGGAGAAGAACAAGCACAATTTCATGGTGCATAGCGTCCTGGCAC
CCATGGATGCTGATCTAAGCGATTTGAATAAATTGAGGAAGGATCTGGAG
CCCGAACAGCTGATGGACTCCTAACTGAAGTGCGTTTTCTAGATGCCCAC
CGCTGAGGCAAATGCTGATAACACCAGCGGTGGTGGTGCCGTTGGCGGCG
GAACCGGATCTGCCAGAGGCGGAATCGCGGGTGCCAATACTAACTCACCC
AGCGCTGATGCGCTCGATAGCAAGCCGAAACTCTCCAGCGAGGATAAGTT
TAAGCCATCCAATTTGCTCGAAACGTCAGAGAGTCTGGACTTGCTGTCCG
GACAGATCAAAGCGCTGCGTGAATGCAACATTGAATTGCGAACAGAGAAT
CTTCACTTGAAGGATCAAATCACACGTTTCCGGAGCTCGCCGGCCGTCAA
AAAGGTGAATGATCCCTATGCCCCATCCTGGCTGAAAAGCAGATTCCGGT
CTTTTACATTGCATTTGCCTTGCTGCCGCCATCGTTAGCCTCCTGCTGGG
CAAGTCTTTCTCGGAGCTTTCTATACCGTTCGTTCTGGCGCGCGGGCACA
GGT
FMO02522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Vap-33A-RE | 3897 | CG5014-RE | 568..1374 | 9..812 | 3435 | 95.3 | Plus |
| Vap-33A-RC | 3607 | CG5014-RC | 278..1084 | 9..812 | 3435 | 95.3 | Plus |
| Vap-33A-RB | 2541 | CG5014-RB | 568..1374 | 9..812 | 3435 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3951830..3952041 | 337..548 | 865 | 93.9 | Plus |
| X | 23542271 | X | 3951414..3951567 | 72..225 | 710 | 97.4 | Plus |
| X | 23542271 | X | 3952761..3952909 | 657..803 | 555 | 94.6 | Plus |
| X | 23542271 | X | 3952106..3952222 | 547..663 | 540 | 97.4 | Plus |
| X | 23542271 | X | 3951636..3951745 | 226..335 | 475 | 95.5 | Plus |
| X | 23542271 | X | 3949650..3949715 | 9..74 | 285 | 95.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:00:40 has no hits.
FMO02522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:25 Download gff for
FMO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5014-RB | 559..1376 | 1..815 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:00 Download gff for
FMO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33-1-RB | 560..1377 | 1..815 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:39:39 Download gff for
FMO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Vap-33A-RB | 560..1377 | 1..815 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:39:39 Download gff for
FMO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3951415..3951567 | 73..225 | 97 | -> | Plus |
| X | 3951636..3951745 | 226..335 | 95 | -> | Plus |
| X | 3951829..3952041 | 336..548 | 93 | -> | Plus |
| X | 3952108..3952221 | 549..662 | 97 | -> | Plus |
| X | 3952767..3952922 | 663..815 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:00 Download gff for
FMO02522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3845448..3845600 | 73..225 | 97 | -> | Plus |
| arm_X | 3845669..3845778 | 226..335 | 95 | -> | Plus |
| arm_X | 3845862..3846074 | 336..548 | 93 | -> | Plus |
| arm_X | 3846141..3846254 | 549..662 | 97 | -> | Plus |
| arm_X | 3846800..3846955 | 663..815 | 93 | | Plus |
