FMO02524.5prime Sequence
866 bp (866 high quality bases) assembled on 2008-05-23
> FMO02524.5prime
CAGTCGACATGCACAAAACACACCGTCTCACCACCGACAGCCAGTACATG
GAGGTCGAAGGCTTGCTGCAGGCCATGGACATGCCCACCAGCCACGACCC
GGAGGCGGAACTGGAACCGGAGTCCACGTCGCTGTGCCGCCTGAGCCGCT
ACAACGTGACCAACCTGTACGACGGGCCGGCGGGCGGGGGTTCCTCATTG
AGCTCGGGCCGCCAGCGTTGCTACACAATGCCGCATGTGCCACCGCCAGC
GCCGCCCTCCACGCCCACTCTGCTGACCAGCGGGTGCGGCGGCAGCAGCA
ACTCCGTATCCGTCTCCATCTCGCCCACCTGCTCCGCTGGAAGCCATCCC
TTGGATAGCCAAAGTTTGAGCCAGAGCCCCTTGAACCACTTCATCTACGT
AAAGAATGGCAAGAACCTGCGTCGCGAATCGCGCTGCGTCGACTCGGAGC
TGTCAAAGTTATTCAACGTGGTGTCCATCACAAACCGGCTGACGGCTATT
AAGAACCGCAGCAATTCCATTTCGAATTCCAGTGGAATACTCAATGCCTC
GCGCACCATATCGAAGTTAAACGGGGCGACGGCCACCAAGATCTTTAAGA
TTCATCGGGATCCGAAGGAATTTCTGCGCGAAACGGACGAGGATTCCGTG
TCTGCGCCGGAGTACGACGAGGAGGAGGAGGACACGCGCTTCCGTTTCTT
TCGGCGTGCGCGCTTCTCGAGGAGGTACAGTACCGCACGATCCGGCCGGA
AATTTGCGCGAAAGTTCGCCCGATTTGAGCATCATGAGCGCATGGAAACC
ATCGTGGATAGTTTCGATGCAGCAATGAGCTTCAATGATGCAGACACCGC
AAGCTTTCTAGACCAT
FMO02524.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8617-RA | 1328 | CG8617-RA | 84..923 | 9..848 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14356174..14356953 | 848..69 | 3900 | 100 | Minus |
| 2R | 25286936 | 2R | 14357135..14357198 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:14:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2781..2816 | 665..700 | 117 | 80.6 | Plus |
FMO02524.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:28 Download gff for
FMO02524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 87..926 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:10 Download gff for
FMO02524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 9..848 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:50 Download gff for
FMO02524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8617-RA | 84..923 | 9..848 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:50 Download gff for
FMO02524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14356174..14356950 | 72..848 | 100 | <- | Minus |
| 2R | 14357136..14357198 | 9..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:10 Download gff for
FMO02524.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10243679..10244455 | 72..848 | 100 | <- | Minus |
| arm_2R | 10244641..10244703 | 9..71 | 100 | | Minus |
