FMO02528.5prime Sequence
1223 bp (1069 high quality bases) assembled on 2008-05-23
> FMO02528.5prime
CAGTCGACATGGCTGAAGCTGTAAAAAATGAAAGTGGCTCCCAACAACGA
CCTTTGGATAGCGGCGGAGGAGGGGGCGCCAGTGGCGGAGGCGGTGTCGC
TGTAGGAGGCGGCTCGGGAATGCCGAAGAGGAAACATCGGCGGGGAAAAA
AATCCAAGATGCAGCCCAAGAAGACCAAGAACCATTATCCGCAGTGGAAA
CTCGATATGTCAACGGGTGCAGGAGCAACGCTGGAGGGGAATCAACGACA
GAATAGCAGAACCAAGCTGGTTCGTTCGCGCTCCTTGCTCGTTCCGTACA
ACACGAACCGCTTCCTAATGGAGGAACACATGTCGGAGCTGCACAAAGAT
GACTCCGACGACAACTGTTTTGGCTCCCAGACCGAAGATCAGGTGCTCTT
CCTTTCCAAGGAGTTCTCCGATGTCTACGAGCGAGCGCGGCTCGAACGTT
TGGAGACGATGAGCAAGCAGGAGCTCATCCAGGAGTGCATGCAAATCGAA
GATCGATATTCGAAGGCCCAGAACATATCCAAGGAGTTTGGAGCCAAATT
ACGAGCGCAGGATGATAAGATTCGCCAACTATCACGTGAGAATCAATTTC
TGCGCACCCACCTCTTGCGCACGTGTTCCGCGACAGCTGGACCAGCGGCA
GCAGCAGCGGCCGCAGCTTCCCCGCCCTCAGCGGTGGCGCCCACTCCCAG
TTCAGCTTGCGAGCTGCAGGCTAGACAACAGCCTCCCCAGCAGCCACAAC
CCACACCCATGGACTCCACCAGCGAGGACAGCGAAAGCGACAGCAGCAGC
ACCACGTCGAGCACCACGTCCACCACTTCCTCGACCAGCAGCGATGGTCA
CGAAATGGGCGTGGCCGGCCTGAACATAGCCAATGGGCATGCCGAGCGGC
ACGAGAGGAGCCGCACCCGCTCCAGGTCTAGATCACGATCCACCTGAATG
GTCATGCCAACGAGGAGGAGCGTCAGCGCTGCTAGATGAAATCAATGGAG
GAGACGACACTCAGCGATGTTATCAGCCAGCCGATGCAGTGTCAAAGCAG
CCTTTCTAGACCATCGTTTGGCCGCGCGGGCCCAGGTAGTGTCATATCAT
AATCCTATACTAATCATATCCAACCTAGCCTAGGGGATCTGCCTGACATT
GGCTTGGAATTTCACAATAAAAGCTGCCGGGCGCAAGCCTAGAACGATCT
GTCGAACCAGATCCCGAAATTTG
FMO02528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hexim-RA | 1515 | CG3508-RA | 122..1170 | 7..1046 | 4975 | 99 | Plus |
| Hexim-RB | 1548 | CG3508-RB | 173..1203 | 25..1046 | 4870 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14659743..14660317 | 30..604 | 2845 | 99.7 | Plus |
| 3R | 32079331 | 3R | 14660375..14660757 | 598..979 | 1865 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 23:29:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2533 | 628..825 | 177 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6822 | 726..804 | 145 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6762..6870 | 712..816 | 121 | 59.6 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..784 | 803..654 | 114 | 57 | Minus |
FMO02528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:44 Download gff for
FMO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3508-RA | 113..1170 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:25:57 Download gff for
FMO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexim-RA | 113..1170 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:14:08 Download gff for
FMO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hexim-RA | 116..1173 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:14:08 Download gff for
FMO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14659744..14660310 | 31..597 | 100 | -> | Plus |
| 3R | 14660375..14660835 | 598..1050 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:25:57 Download gff for
FMO02528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10485466..10486032 | 31..597 | 100 | -> | Plus |
| arm_3R | 10486097..10486557 | 598..1050 | 97 | == | Plus |
