FMO02531.5prime Sequence
1199 bp (1005 high quality bases) assembled on 2008-05-23
> FMO02531.5prime
CAGTCGACATGTCGATGTTTTGGGGTTTGAACATGAAGCCTGAGCGCAAG
TACTCGCAGACGATCATCAAGTCGTTCCACATCTCGGGCGTGGCACTCGA
CAAGGGCCAGGAGGCCAAGTTGTACCTCGCTGCCGAGAAGCAGGAGTACA
TCGTGGCCACCGTGACCAAGGCCATTCCACAGGTTGCGCTCGACCTGAAC
TTCAGCAAGGGCGATCGCATCATGTTCTACACCGCCGGCGACGCCAGCGT
TTCTCTGTTGGGCTACTTGCACGACATTGATTCCGAAGATGATGAGGATG
ACGATCAAATGACGATCGAGAATTTGCTGAACTCCAAGGCGATCAAGAAT
AGCAAAAAGTCTGAAGATGATGAGGATGAGAATGAGAGCGGCGAGGAGGA
CGAGGAGGATACTGATGACGATAGCCAGATAATCGAGGAATACGAGTCCT
TCCTCGAAAATGGTGAGGAGGAAGATGACGACGATGTTGATGAGGATAAC
GAGGAGAGTGGCGAGGAGGATGAACAGGACAGCGACGACTCCGAAGCTGA
AGAGGAACAGCCAAAGGCCAAGGTTGCCAAGCTCTCTCCTGGCGCTAGCG
CCAAGAAATCTGGCAAGGAGCAGAACGGTGTGGCCAAGAAGGAGGAGGCC
AAGCAGCAGCAAAAGAAGAAGGAGAAGCCAGAGGCCAAGAAGGAACAACC
CAAGGCCAAAGAGCCAGCCAAGCAGCAACCAGCTTCTAAGGATCCACGTA
CTATCACCGGAGCGTGAAGATTGTGGATCAGGTCGTCGGCAAAGGCGAAG
AAGCCAAGCAGGCAAACGCGTATCTGTTTACTACATCGGCCGCCTGCAGT
CGAACAACAAGACCTTCGACAGCCTCCTGAAGGGAAAACCATTTAAGTTC
GCTCTGGGCGGCGGAAAGGTCATCAAGGGCTGGGACGTGGGAGTCGCCGG
CATGAAGGTGGGCGCAAGCGAGTCATTACCTGCTCCTCGCCACATGGCGT
ACGCGCACGGGAGCTCCACGAAGATCGGACCGACCTCCACTCTCGTCTTC
GAAGTGACTGAAAGCTGTGCATGCAGCTTTCTAGACATTCGTTGGGCGCG
CGGGCCCAGTATGTCATAATCTAATCTAATCCTAAATCTAATCACTAGCT
AGGAAATCTGTCTGACATGGCTGAATCCCACAATAAAAACCTCCCGGGG
FMO02531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| FK506-bp1-RA | 1299 | CG6226-RA | 106..1176 | 9..1072 | 5055 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15331707..15332549 | 1072..237 | 3715 | 98.2 | Minus |
| 3R | 32079331 | 3R | 15332615..15332829 | 238..24 | 1075 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:44:02 has no hits.
FMO02531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 15:45:48 Download gff for
FMO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6226-RA | 108..1188 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:18:57 Download gff for
FMO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FK506-bp1-RA | 99..1179 | 1..1076 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:44 Download gff for
FMO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| FK506-bp1-RA | 99..1179 | 1..1076 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:44 Download gff for
FMO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15331707..15332548 | 238..1072 | 98 | <- | Minus |
| 3R | 15332616..15332828 | 25..237 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:18:57 Download gff for
FMO02531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11157429..11158270 | 238..1072 | 98 | <- | Minus |
| arm_3R | 11158338..11158550 | 25..237 | 100 | <- | Minus |
